CuGenDBv2

Gene ID	Lsi01G009290
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	suppressor of RPS4-RLD 1
Genome location	chr01:7508940..7512328
RNA-Seq Expression	Lsi01G009290
Synteny	Lsi01G009290
Gene Ontology terms	GO:0031348 - negative regulation of defense response (biological process) GO:0042742 - defense response to bacterium (biological process) GO:0045892 - negative regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0048471 - perinuclear region of cytoplasm (cellular component)
InterPro domains	IPR044650 - Tetratricopeptide repeat protein SRFR1-like

Homology

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GenBank top hits

e value

%identity

Alignment

TYK12842.1 suppressor of RPS4-RLD 1 [Cucumis melo var. makuwa]

1.5e-46

95.96

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Query:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Subjt:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

XP_004141990.1 suppressor of RPS4-RLD 1 [Cucumis sativus]

1.5e-46

95.96

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Query:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Subjt:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

XP_008440343.1 PREDICTED: suppressor of RPS4-RLD 1 [Cucumis melo]

1.5e-46

95.96

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Query:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Subjt:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

XP_022963095.1 suppressor of RPS4-RLD 1 isoform X1 [Cucurbita moschata]

4.0e-44

91.84

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Query:  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        ++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEA+LNFDPN FVDSVKSWLYPSLKMTTSWKE+PDVAST KTTGSVV+ALSSYDD
Subjt:  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

XP_038883616.1 suppressor of RPS4-RLD 1 [Benincasa hispida]

8.0e-45

93.88

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Query:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYD
        +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIP+GLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDV STLKTTGSVVAALSSYD
Subjt:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIG1 TPR_REGION domain-containing protein

7.1e-47

95.96

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Query:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Subjt:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

A0A1S3B1I4 suppressor of RPS4-RLD 1

7.1e-47

95.96

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Query:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Subjt:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

A0A5D3CNB4 Suppressor of RPS4-RLD 1

7.1e-47

95.96

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Query:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        +++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
Subjt:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

A0A6J1HH14 suppressor of RPS4-RLD 1 isoform X1

1.9e-44

91.84

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Query:  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        ++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEA+LNFDPN FVDSVKSWLYPSLKMTTSWKE+PDVAST KTTGSVV+ALSSYDD
Subjt:  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

A0A6J1KN76 suppressor of RPS4-RLD 1

1.9e-44

91.84

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Query:  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        ++ YNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEA+LNFDPN FVDSVKSWLYPSLKMTTSWKE+PDVAST KTTGSVV+ALSSYDD
Subjt:  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

SwissProt top hits

e value

%identity

Alignment

F4JS25 Suppressor of RPS4-RLD 1

7.8e-35

68.37

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Query:  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        ++ YNFMPL+RG+A  GFVVLLGLLLAANMEF   IP+GLQ+DWEA+LN +P SFVDSVKSWLYPSLK+ TSW+++ +++S   TTG+VVAALS+Y+D
Subjt:  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

Q8NBP0 Tetratricopeptide repeat protein 13

4.6e-11

38.14

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Query:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLK-MTTSWKEYPDVASTLKTTGSVVAALSS
        +++ YN MPLSRGS+ + + V++G L+A+  E  G IP+G  VD+EAM      +F    KSW+  +LK ++ S+K  P V+ T  T  S++  L++
Subjt:  LHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLK-MTTSWKEYPDVASTLKTTGSVVAALSS

Arabidopsis top hits

e value

%identity

Alignment

AT4G37460.1 Tetratricopeptide repeat (TPR)-like superfamily protein

5.6e-36

68.37

Show/hide

Query:  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD
        ++ YNFMPL+RG+A  GFVVLLGLLLAANMEF   IP+GLQ+DWEA+LN +P SFVDSVKSWLYPSLK+ TSW+++ +++S   TTG+VVAALS+Y+D
Subjt:  HFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVASTLKTTGSVVAALSSYDD

Sequences

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CDS sequence

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ATGTATATAATCAGAATTTTTATGTTCTATGCAATGACTTCAATGGCACATTTCGATTGTCAATTCAGCAGGGTTCTAAAAACTCAACTGCATTTTAGGTACAATTTTAT
GCCACTATCAAGGGGCTCTGCGGCTGTTGGATTTGTTGTTTTGCTTGGATTGCTTCTTGCAGCTAACATGGAGTTCTGTGGGAACATTCCGCGAGGACTGCAAGTGGATT
GGGAAGCCATGTTGAATTTCGATCCAAATTCTTTTGTTGATTCTGTGAAGAGTTGGTTGTATCCGTCTCTCAAGATGACAACATCGTGGAAAGAATATCCAGATGTGGCA
TCAACTCTCAAAACAACGGGATCAGTTGTTGCTGCTTTGAGCTCTTATGATGATTGA

mRNA sequence

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Protein sequence

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MYIIRIFMFYAMTSMAHFDCQFSRVLKTQLHFRYNFMPLSRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKMTTSWKEYPDVA
STLKTTGSVVAALSSYDD

Lsi01G009290 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome