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Lsi01G009880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G009880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptiontRNA Delta(2)-isopentenylpyrophosphate transferase, putative
Genome locationchr01:8170957..8173831
RNA-Seq ExpressionLsi01G009880
SyntenyLsi01G009880
Gene Ontology termsGO:0048364 - root development (biological process)
GO:0050793 - regulation of developmental process (biological process)
InterPro domainsIPR033250 - C-terminally encoded peptide


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOX91365.1 TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao]9.2e-1047.31Show/hide
Query:  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKL-----VSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
        S R+  VCV+++VL+LC       VE RHL++  CKKCS+           +  + +S G+GQ+  T+KAE   DFRPTSPGHSPGVGH I N
Subjt:  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKL-----VSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

KAE8647497.1 hypothetical protein Csa_004238, partial [Cucumis sativus]1.9e-3177.08Show/hide
Query:  KMMKRSGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATR-CKKCSKLV--SVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
        KMMKR+GR CGVC+ IIVLVLCL++EGVYVECRHLK++R CKKCSK +  S PP P +  SAGN QQF T KAELPQDFRPTSPGHSPGVGHHINN
Subjt:  KMMKRSGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATR-CKKCSKLV--SVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

KAG6595044.1 hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2561.62Show/hide
Query:  MKRSGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKLVSVP--------PQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
        MK + R+ GVCV I+ L+LCL+HE VYVECRHLK++RCKKC+K ++ P          P +   AGN Q+F T+KAE PQDFRPTSPGHSPGVGHHINN
Subjt:  MKRSGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKLVSVP--------PQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

OAY33803.1 hypothetical protein MANES_13G126300v8 [Manihot esculenta]2.0e-0948.86Show/hide
Query:  RVCGVCVMIIVLVLCLTHEGVYVECRHLKATR-CKKCSKLVSVPPQPVNRNSAG-NGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
        RV G C+ ++VL+LC  HE + VE RHLK  + CKKC +L       V+ ++    G Q  T+K +   DFRPT PGHSPGVGH INN
Subjt:  RVCGVCVMIIVLVLCLTHEGVYVECRHLKATR-CKKCSKLVSVPPQPVNRNSAG-NGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

OMP02045.1 hypothetical protein COLO4_11385 [Corchorus olitorius]3.5e-0945.05Show/hide
Query:  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSK---LVSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
        S RV   CV ++VL+LC     + VE RHL++  C+KCS+     S+    +  +S  +GQ+  +NK +   DFRPT+PGHSPGVGH INN
Subjt:  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSK---LVSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

TrEMBL top hitse value%identityAlignment
A0A061DGB8 tRNA Delta(2)-isopentenylpyrophosphate transferase, putative4.4e-1047.31Show/hide
Query:  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKL-----VSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
        S R+  VCV+++VL+LC       VE RHL++  CKKCS+           +  + +S G+GQ+  T+KAE   DFRPTSPGHSPGVGH I N
Subjt:  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKL-----VSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

A0A0A0KGB6 Uncharacterized protein8.6e-2276.39Show/hide
Query:  HEGVYVECRHLKATR-CKKCSKLV--SVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
        +EGVYVECRHLK++R CKKCSK +  S PP P +  SAGN QQF T KAELPQDFRPTSPGHSPGVGHHINN
Subjt:  HEGVYVECRHLKATR-CKKCSKLV--SVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

A0A1R3K4N2 Uncharacterized protein1.7e-0945.05Show/hide
Query:  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSK---LVSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
        S RV   CV ++VL+LC     + VE RHL++  C+KCS+     S+    +  +S  +GQ+  +NK +   DFRPT+PGHSPGVGH INN
Subjt:  SGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSK---LVSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

A0A2C9URG2 Uncharacterized protein9.9e-1048.86Show/hide
Query:  RVCGVCVMIIVLVLCLTHEGVYVECRHLKATR-CKKCSKLVSVPPQPVNRNSAG-NGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
        RV G C+ ++VL+LC  HE + VE RHLK  + CKKC +L       V+ ++    G Q  T+K +   DFRPT PGHSPGVGH INN
Subjt:  RVCGVCVMIIVLVLCLTHEGVYVECRHLKATR-CKKCSKLVSVPPQPVNRNSAG-NGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

B9S8I9 Uncharacterized protein3.8e-0946.67Show/hide
Query:  GVCVMIIVLVLCLTHEGVY-VECRHLKATRCKKCSKL------VSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
        G C  ++VL+LC  HE +Y VE RHLK   CKKCS+       VS            NG Q   +K +   DFRPT+PGHSPGVGH I N
Subjt:  GVCVMIIVLVLCLTHEGVY-VECRHLKATRCKKCSKL------VSVPPQPVNRNSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN

SwissProt top hitse value%identityAlignment
P0DN97 Precursor of CEP87.8e-0430.77Show/hide
Query:  CVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKLVSVPPQPVNRNSAGNGQQFMTNKAELPQD-FRPTSPGHSPGVGH
        C+ ++++ + ++HE +  E RHL+  R    +  ++V        + G   +   +K E   D FRPT+PG+SPG+GH
Subjt:  CVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKLVSVPPQPVNRNSAGNGQQFMTNKAELPQD-FRPTSPGHSPGVGH

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAGGCTGTTGGAGTTGAAAATCTTAACTCGTGTATTGCACGGAAATCCAATTTTTCTGCCCCGTCGGTTGCTGGAAGACAAAAGACATTCAAACACACATGCAAG
CCACAATAAAAATCAATTATTGTTGTTATATAAAATGATGAAGAGAAGTGGTAGGGTTTGTGGGGTTTGTGTTATGATTATTGTTTTGGTTTTGTGTTTAACCCATGAGG
GGGTTTACGTAGAATGCCGGCATTTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGGTCAGTGTTCCGCCGCAGCCGGTTAATCGGAATTCCGCCGGAAATGGTCAA
CAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAGGCTGTTGGAGTTGAAAATCTTAACTCGTGTATTGCACGGAAATCCAATTTTTCTGCCCCGTCGGTTGCTGGAAGACAAAAGACATTCAAACACACATGCAAG
CCACAATAAAAATCAATTATTGTTGTTATATAAAATGATGAAGAGAAGTGGTAGGGTTTGTGGGGTTTGTGTTATGATTATTGTTTTGGTTTTGTGTTTAACCCATGAGG
GGGTTTACGTAGAATGCCGGCATTTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGGTCAGTGTTCCGCCGCAGCCGGTTAATCGGAATTCCGCCGGAAATGGTCAA
CAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGA
Protein sequenceShow/hide protein sequence
MHRLLELKILTRVLHGNPIFLPRRLLEDKRHSNTHASHNKNQLLLLYKMMKRSGRVCGVCVMIIVLVLCLTHEGVYVECRHLKATRCKKCSKLVSVPPQPVNRNSAGNGQ
QFMTNKAELPQDFRPTSPGHSPGVGHHINN