CuGenDBv2

Gene ID	Lsi01G010290
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	SHR-BD domain-containing protein
Genome location	chr01:8497567..8499573
RNA-Seq Expression	Lsi01G010290
Synteny	Lsi01G010290
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR026847 - Vacuolar protein sorting-associated protein 13

Homology

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GenBank top hits

e value

%identity

Alignment

TYK12930.1 uncharacterized protein E5676_scaffold255G005250 [Cucumis melo var. makuwa]

1.3e-39

93.55

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Query:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMW
        DSKTYPGPLIVVDISHHPEDGLSIVISPMT I NESGLTMELRFRRNQPNEDECASVLLK  DVIDDSMAMFDALN SGGSRKAL SLSVGMW
Subjt:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMW

XP_011657817.1 uncharacterized protein LOC101222087 isoform X1 [Cucumis sativus]

2.8e-39

88.66

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Query:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF
        DSKTYPGPLIVVDISHHPEDGLSIV+SPMT IHNESGLTMELRFRRNQPNEDE ASVLLK  DVIDDSMAMFDALNSSGGSRKAL SLS+G +L+ F
Subjt:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF

XP_038880802.1 uncharacterized protein LOC120072502 isoform X1 [Benincasa hispida]

4.6e-42

93.81

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Query:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF
        DSKTYPGPLIVVDISHHPEDGLSIVISPMT IHNESGLTMELRFRRNQPNEDECASVLLK GDVIDDSMAMFDALNSSGGSRKALKSLSVG +L+ F
Subjt:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF

XP_038880803.1 uncharacterized protein LOC120072502 isoform X2 [Benincasa hispida]

4.6e-42

93.81

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Query:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF
        DSKTYPGPLIVVDISHHPEDGLSIVISPMT IHNESGLTMELRFRRNQPNEDECASVLLK GDVIDDSMAMFDALNSSGGSRKALKSLSVG +L+ F
Subjt:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF

XP_038880804.1 uncharacterized protein LOC120072502 isoform X3 [Benincasa hispida]

4.6e-42

93.81

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Query:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF
        DSKTYPGPLIVVDISHHPEDGLSIVISPMT IHNESGLTMELRFRRNQPNEDECASVLLK GDVIDDSMAMFDALNSSGGSRKALKSLSVG +L+ F
Subjt:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJC9 Uncharacterized protein

1.4e-39

88.66

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Query:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF
        DSKTYPGPLIVVDISHHPEDGLSIV+SPMT IHNESGLTMELRFRRNQPNEDE ASVLLK  DVIDDSMAMFDALNSSGGSRKAL SLS+G +L+ F
Subjt:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF

A0A1S3B0I1 uncharacterized protein LOC103484730 isoform X1

2.3e-39

89.69

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Query:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF
        DSKTYPGPLIVVDISHHPEDGLSIVISPMT I NESGLTMELRFRRNQPNEDECASVLLK  DVIDDSMAMFDALN SGGSRKAL SLSVG +L+ F
Subjt:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF

A0A1S3B0K4 uncharacterized protein LOC103484730 isoform X4

2.3e-39

89.69

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Query:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF
        DSKTYPGPLIVVDISHHPEDGLSIVISPMT I NESGLTMELRFRRNQPNEDECASVLLK  DVIDDSMAMFDALN SGGSRKAL SLSVG +L+ F
Subjt:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF

A0A1S4DTE9 uncharacterized protein LOC103484730 isoform X5

2.3e-39

89.69

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Query:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF
        DSKTYPGPLIVVDISHHPEDGLSIVISPMT I NESGLTMELRFRRNQPNEDECASVLLK  DVIDDSMAMFDALN SGGSRKAL SLSVG +L+ F
Subjt:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMWLIGF

A0A5D3CNB0 Uncharacterized protein

6.1e-40

93.55

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Query:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMW
        DSKTYPGPLIVVDISHHPEDGLSIVISPMT I NESGLTMELRFRRNQPNEDECASVLLK  DVIDDSMAMFDALN SGGSRKAL SLSVGMW
Subjt:  DSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGMW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G50380.1 Protein of unknown function (DUF1162)

2.1e-24

48.36

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Query:  MSSVANLSLMELSNHI-------IFDSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDAL
        ++S  N+SL+E            + DS+++PGP +VVDI    EDGLSI +SP+T IHNE+ L +E+RF+R++   DE ASV LKPG  IDDS+A F+A+
Subjt:  MSSVANLSLMELSNHI-------IFDSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDAL

Query:  NSSGGSRKALKSLSVGMWLIGF
        +SSG  +KAL SL+VG + + F
Subjt:  NSSGGSRKALKSLSVGMWLIGF

Sequences

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CDS sequence

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ATGTCTTCTGTAGCCAACTTGTCACTCATGGAACTTAGCAATCACATCATCTTTGATTCAAAAACTTATCCAGGACCGCTTATTGTGGTTGACATTTCTCATCATCCTGA
GGATGGTTTGTCCATTGTGATTTCCCCTATGACGATAATACATAATGAAAGTGGACTAACCATGGAACTTCGATTTCGTCGAAACCAACCAAATGAAGATGAATGTGCTT
CTGTGTTGCTAAAACCTGGAGATGTGATTGATGATTCAATGGCAATGTTTGATGCTTTAAACTCTTCTGGTGGATCGAGAAAAGCATTAAAGTCTCTAAGTGTTGGTATG
TGGTTAATTGGATTTTGGAATTCCAAAAGTCAGTGA

mRNA sequence

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Protein sequence

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MSSVANLSLMELSNHIIFDSKTYPGPLIVVDISHHPEDGLSIVISPMTIIHNESGLTMELRFRRNQPNEDECASVLLKPGDVIDDSMAMFDALNSSGGSRKALKSLSVGM
WLIGFWNSKSQ

Lsi01G010290 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome