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Lsi01G010470 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G010470
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L13
Genome locationchr01:8672723..8673091
RNA-Seq ExpressionLsi01G010470
SyntenyLsi01G010470
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0010468 - regulation of gene expression (biological process)
GO:0010556 - regulation of macromolecule biosynthetic process (biological process)
GO:0031326 - regulation of cellular biosynthetic process (biological process)
GO:0051171 - regulation of nitrogen compound metabolic process (biological process)
GO:0080090 - regulation of primary metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005822 - Ribosomal protein L13
IPR036899 - Ribosomal protein L13 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1872219.1 hypothetical protein Lal_00038003 [Lupinus albus]1.4e-3057.38Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFF--YQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVL
        ++A AGLRRINL+GLRWRVFDAK Q+    + +            S ++ + +  +   +     +VLGRLASQI+TV+QGKDKPTYTPNRDDGDMC+VL
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFF--YQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVL

Query:  NAKDIAITGRKLTQKVHYWHTG
        NAKDI +TGRKLT KV+YWHTG
Subjt:  NAKDIAITGRKLTQKVHYWHTG

KAF3444476.1 hypothetical protein FNV43_RR14168 [Rhamnella rubrinervis]2.4e-3061.67Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
        QKA+AGLRRINLEGLRWRVFDAK                                        QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA

Query:  KDIAITGRKLTQKVHYWHTG
        KD+ +TGRKLT KV+YWHTG
Subjt:  KDIAITGRKLTQKVHYWHTG

XP_038883186.1 50S ribosomal protein L13 isoform X1 [Benincasa hispida]2.8e-3164.17Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
        QKALAGLRRINLEGLRWRVFDAK                                        QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA

Query:  KDIAITGRKLTQKVHYWHTG
        KDIA+TGRKLT KV+YWHTG
Subjt:  KDIAITGRKLTQKVHYWHTG

XP_038883187.1 50S ribosomal protein L13 isoform X2 [Benincasa hispida]2.8e-3164.17Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
        QKALAGLRRINLEGLRWRVFDAK                                        QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA

Query:  KDIAITGRKLTQKVHYWHTG
        KDIA+TGRKLT KV+YWHTG
Subjt:  KDIAITGRKLTQKVHYWHTG

XP_038883188.1 50S ribosomal protein L13 isoform X3 [Benincasa hispida]8.2e-3163.33Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
        +KALAGLRRINLEGLRWRVFDAK                                        QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA

Query:  KDIAITGRKLTQKVHYWHTG
        KDIA+TGRKLT KV+YWHTG
Subjt:  KDIAITGRKLTQKVHYWHTG

TrEMBL top hitse value%identityAlignment
A0A0A0KL19 Uncharacterized protein2.6e-3061.67Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
        +KALAGL+RINLEGLRWRVFDAK                                        QVLGRLASQISTVIQGKDKPTY PNRDDGDMCIVLNA
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA

Query:  KDIAITGRKLTQKVHYWHTG
        KDIA+TGRKLT+KV+YWHTG
Subjt:  KDIAITGRKLTQKVHYWHTG

A0A151TQM7 50S ribosomal protein L132.0e-3061.16Show/hide
Query:  FQKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN
        +QKA AGLRRINLEGLRWRVFDAK                                        QVLGRLASQISTVIQGKDKPTY PNRDDGDMCIVLN
Subjt:  FQKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLN

Query:  AKDIAITGRKLTQKVHYWHTG
        AKDI +TGRKLT KV+YWHTG
Subjt:  AKDIAITGRKLTQKVHYWHTG

A0A1S3B177 50S ribosomal protein L132.0e-3061.67Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
        +KALAGL+RINLEGLRWRVFDAK                                        QVLGRLAS+ISTVIQGKDKPTYTPNRDDGDMCIVLNA
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA

Query:  KDIAITGRKLTQKVHYWHTG
        KDIA+TGRKLT+KV+YWHTG
Subjt:  KDIAITGRKLTQKVHYWHTG

A0A5D3CLX7 Transcription termination factor MTERF52.0e-3061.67Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
        +KALAGL+RINLEGLRWRVFDAK                                        QVLGRLAS+ISTVIQGKDKPTYTPNRDDGDMCIVLNA
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA

Query:  KDIAITGRKLTQKVHYWHTG
        KDIA+TGRKLT+KV+YWHTG
Subjt:  KDIAITGRKLTQKVHYWHTG

A0A6A5MGZ8 Uncharacterized protein6.8e-3157.38Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFF--YQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVL
        ++A AGLRRINL+GLRWRVFDAK Q+    + +            S ++ + +  +   +     +VLGRLASQI+TV+QGKDKPTYTPNRDDGDMC+VL
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFF--YQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVL

Query:  NAKDIAITGRKLTQKVHYWHTG
        NAKDI +TGRKLT KV+YWHTG
Subjt:  NAKDIAITGRKLTQKVHYWHTG

SwissProt top hitse value%identityAlignment
A5IMD1 50S ribosomal protein L134.3e-1456.14Show/hide
Query:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG
        +VLGRLA++I+ ++ GK KP YTP+ D GD  IV+NA  + +TG+KL QKV+YWH+G
Subjt:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG

A9WH96 50S ribosomal protein L132.5e-1461.4Show/hide
Query:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG
        +VLGRLA+QIST+++GK KPT+TP+ D GD  IV+NA+ I +TGRK  QK++Y HTG
Subjt:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG

B1LBJ2 50S ribosomal protein L134.3e-1456.14Show/hide
Query:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG
        +VLGRLA++I+ ++ GK KP YTP+ D GD  IV+NA  + +TG+KL QKV+YWH+G
Subjt:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG

B9LJG2 50S ribosomal protein L132.5e-1461.4Show/hide
Query:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG
        +VLGRLA+QIST+++GK KPT+TP+ D GD  IV+NA+ I +TGRK  QK++Y HTG
Subjt:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG

Q9X1G5 50S ribosomal protein L134.3e-1456.14Show/hide
Query:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG
        +VLGRLA++I+ ++ GK KP YTP+ D GD  IV+NA  + +TG+KL QKV+YWH+G
Subjt:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG

Arabidopsis top hitse value%identityAlignment
AT1G78630.1 Ribosomal protein L13 family protein2.5e-0945.61Show/hide
Query:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG
        ++LGRLAS I+  I+GK+  +YTP+ D G   IV+NA+ +A++G+K  QK++  H+G
Subjt:  QVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGRKLTQKVHYWHTG

AT3G01790.1 Ribosomal protein L13 family protein3.1e-2852.5Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
        +KA+AG++RINL+GLRWRVFDA+                                        QVLGRLASQISTV+Q KDKPTY PNRDDGD+CIVLNA
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA

Query:  KDIAITGRKLTQKVHYWHTG
        K+I  TGRKLT K + WHTG
Subjt:  KDIAITGRKLTQKVHYWHTG

AT3G01790.2 Ribosomal protein L13 family protein3.1e-2852.5Show/hide
Query:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA
        +KA+AG++RINL+GLRWRVFDA+                                        QVLGRLASQISTV+Q KDKPTY PNRDDGD+CIVLNA
Subjt:  QKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNA

Query:  KDIAITGRKLTQKVHYWHTG
        K+I  TGRKLT K + WHTG
Subjt:  KDIAITGRKLTQKVHYWHTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCAGAAAGCACTTGCTGGCTTGAGACGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGACCAGGTTAGAGCAATATTAACACTTCGCTTGAC
ATTTGGTTTTTCAGATTTTGAGGAAGAATGTTCAACAGTAATGATATTTGCTAGAAACAAATACAGCTGCTCTAACTTTTTCTACCAGGTTCTTGGGAGATTGGCATCTC
AAATATCCACCGTTATTCAAGGCAAGGATAAGCCAACATATACACCCAATCGAGATGATGGAGATATGTGCATTGTGCTTAATGCCAAGGATATCGCTATCACAGGAAGA
AAACTCACTCAAAAAGTTCATTACTGGCATACTGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCAGAAAGCACTTGCTGGCTTGAGACGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGACCAGGTTAGAGCAATATTAACACTTCGCTTGAC
ATTTGGTTTTTCAGATTTTGAGGAAGAATGTTCAACAGTAATGATATTTGCTAGAAACAAATACAGCTGCTCTAACTTTTTCTACCAGGTTCTTGGGAGATTGGCATCTC
AAATATCCACCGTTATTCAAGGCAAGGATAAGCCAACATATACACCCAATCGAGATGATGGAGATATGTGCATTGTGCTTAATGCCAAGGATATCGCTATCACAGGAAGA
AAACTCACTCAAAAAGTTCATTACTGGCATACTGGGTAA
Protein sequenceShow/hide protein sequence
MFQKALAGLRRINLEGLRWRVFDAKDQVRAILTLRLTFGFSDFEEECSTVMIFARNKYSCSNFFYQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVLNAKDIAITGR
KLTQKVHYWHTG