CuGenDBv2

Gene ID	Lsi01G010480
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L13
Genome location	chr01:8673360..8673796
RNA-Seq Expression	Lsi01G010480
Synteny	Lsi01G010480
Gene Ontology terms	GO:0007062 - sister chromatid cohesion (biological process) GO:0017148 - negative regulation of translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0008278 - cohesin complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR005822 - Ribosomal protein L13 IPR036899 - Ribosomal protein L13 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022133371.1 uncharacterized protein LOC111005959 [Momordica charantia]

1.4e-36

85.57

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA
        +AKDPTEVIR+AVLRMLP+NKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPRVRRAMIR++ KAE+Q N  N  +KSRKKEEKVEVIA
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA

XP_023003668.1 uncharacterized protein LOC111497191 [Cucurbita maxima]

2.1e-37

86.6

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA
        MAKDPTEVIR+AVLRMLP+NKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPR RRAMIR++ KAE+QQN +N+ KK+RKKEEKVEVIA
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA

XP_038883186.1 50S ribosomal protein L13 isoform X1 [Benincasa hispida]

1.0e-36

88.66

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA
        MAKDPTEVIR+AVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPR VRE+RP+VRRAMIR++ KAE+QQNS N  KKSRKKEEKVEVIA
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA

XP_038883187.1 50S ribosomal protein L13 isoform X2 [Benincasa hispida]

1.0e-36

88.66

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA
        MAKDPTEVIR+AVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPR VRE+RP+VRRAMIR++ KAE+QQNS N  KKSRKKEEKVEVIA
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA

XP_038883188.1 50S ribosomal protein L13 isoform X3 [Benincasa hispida]

1.0e-36

88.66

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA
        MAKDPTEVIR+AVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPR VRE+RP+VRRAMIR++ KAE+QQNS N  KKSRKKEEKVEVIA
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KL19 Uncharacterized protein

1.9e-36

84.54

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA
        M +DPTEVIR+AVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RP+VRRAMIR++  AE+QQN++N GK+SRKKEEKVEV A
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA

A0A6J1BUX0 uncharacterized protein LOC111005959

6.6e-37

85.57

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA
        +AKDPTEVIR+AVLRMLP+NKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPRVRRAMIR++ KAE+Q N  N  +KSRKKEEKVEVIA
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA

A0A6J1CC45 uncharacterized protein LOC111010318

1.9e-36

84.54

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA
        +AKDPTEVIR+AVLRMLP+N+LRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPRVRRAMIR++ KAE+Q N  N  +KSRKKEEKVEVIA
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA

A0A6J1HEZ9 uncharacterized protein LOC111463568

1.5e-36

84.38

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVI
        MAKDPTEVIR+AVLRMLP+NKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPR RRAMIR++ KAE+QQN++N+ KK+RKKEEKVE +
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVI

A0A6J1KX97 uncharacterized protein LOC111497191

1.0e-37

86.6

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA
        MAKDPTEVIR+AVLRMLP+NKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPR RRAMIR++ KAE+QQN +N+ KK+RKKEEKVEVIA
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA

SwissProt top hits

e value

%identity

Alignment

A1KPD0 50S ribosomal protein L13

6.4e-05

45.83

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPY
        M + P  V+ +A+L MLPKN+L     RKLR++AG EHP   +   PY
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPY

A5U8B9 50S ribosomal protein L13

6.4e-05

45.83

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPY
        M + P  V+ +A+L MLPKN+L     RKLR++AG EHP   +   PY
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPY

C1AHQ2 50S ribosomal protein L13

6.4e-05

45.83

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPY
        M + P  V+ +A+L MLPKN+L     RKLR++AG EHP   +   PY
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPY

P66066 50S ribosomal protein L13

6.4e-05

45.83

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPY
        M + P  V+ +A+L MLPKN+L     RKLR++AG EHP   +   PY
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPY

P9WHE0 50S ribosomal protein L13

6.4e-05

45.83

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPY
        M + P  V+ +A+L MLPKN+L     RKLR++AG EHP   +   PY
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPY

Arabidopsis top hits

e value

%identity

Alignment

AT3G01790.1 Ribosomal protein L13 family protein

1.3e-29

70.79

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKK
        MAKDPTEVIR+AV RMLP N LRDDRDRKLRIF G EHPFGD+PLEP++MPPR VRE+RPR RRAMIR++ KAE+ +N     KK +K+
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKK

AT3G01790.2 Ribosomal protein L13 family protein

1.3e-29

70.79

Show/hide

Query:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKK
        MAKDPTEVIR+AV RMLP N LRDDRDRKLRIF G EHPFGD+PLEP++MPPR VRE+RPR RRAMIR++ KAE+ +N     KK +K+
Subjt:  MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCAAAGATCCTACAGAAGTCATTCGTAGAGCCGTATTGCGCATGCTTCCAAAAAATAAATTGCGTGATGATAGAGATCGAAAACTGAGAATTTTCGCTGGTGATGA
ACACCCTTTTGGCGACCGCCCACTTGAGCCCTATATCATGCCACCGCGTAATGTAAGAGAGATCCGTCCTCGGGTAAGACGAGCCATGATTCGATCACGAATGAAGGCCG
AGGAACAACAAAACAGTGAGAATAATGGAAAGAAAAGTAGAAAGAAAGAAGAGAAGGTAGAAGTGATTGCATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAKDPTEVIRRAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREIRPRVRRAMIRSRMKAEEQQNSENNGKKSRKKEEKVEVIA

Lsi01G010480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome