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Lsi01G010850 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G010850
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA topoisomerase 4 subunit B
Genome locationchr01:8985977..8986189
RNA-Seq ExpressionLsi01G010850
SyntenyLsi01G010850
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER45594.1 DNA topoisomerase 4 subunit B [Striga asiatica]1.3e-0492Show/hide
Query:  LRMNAGLGHLEWREPHAGRPARTVF
        LRMNAGLGHLEWREPHAGRPART++
Subjt:  LRMNAGLGHLEWREPHAGRPARTVF
XP_040243507.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like [Aegilops tauschii subsp. strangulata]6.9e-0679.49Show/hide
Query:  MNAGLGHLEWREPHAGRPARTVFRGIWSKDRPA---PTR
        MNAGLGHL+WREPHAGRPARTVFRGI    RPA   PTR
Subjt:  MNAGLGHLEWREPHAGRPARTVFRGIWSKDRPA---PTR
XP_040251466.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like [Aegilops tauschii subsp. strangulata]6.9e-0679.49Show/hide
Query:  MNAGLGHLEWREPHAGRPARTVFRGIWSKDRPA---PTR
        MNAGLGHL+WREPHAGRPARTVFRGI    RPA   PTR
Subjt:  MNAGLGHLEWREPHAGRPARTVFRGIWSKDRPA---PTR
TrEMBL top hitse value%identityAlignment
A0A0E0DVR6 Uncharacterized protein2.5e-0678.05Show/hide
Query:  LRMNAGLGHLEWREPHAGRPARTVFRGIWSKDRPA---PTR
        LRMNA LGHL+WREPHAGRPARTVFRGI    RPA   PTR
Subjt:  LRMNAGLGHLEWREPHAGRPARTVFRGIWSKDRPA---PTR
A0A0E0RI13 Uncharacterized protein2.8e-0576.92Show/hide
Query:  MNAGLGHLEWREPHAGRPARTVFRGIWSKDRPA---PTR
        MNA LGHL+WREPHAGRPARTVFRGI    RPA   PTR
Subjt:  MNAGLGHLEWREPHAGRPARTVFRGIWSKDRPA---PTR
A0A453J299 Uncharacterized protein3.3e-0679.49Show/hide
Query:  MNAGLGHLEWREPHAGRPARTVFRGIWSKDRPA---PTR
        MNAGLGHL+WREPHAGRPARTVFRGI    RPA   PTR
Subjt:  MNAGLGHLEWREPHAGRPARTVFRGIWSKDRPA---PTR
A0A5A7QKD3 DNA topoisomerase 4 subunit B6.3e-0592Show/hide
Query:  LRMNAGLGHLEWREPHAGRPARTVF
        LRMNAGLGHLEWREPHAGRPART++
Subjt:  LRMNAGLGHLEWREPHAGRPARTVF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACGACAGACAGCGCTGCCTACACGCGAATTAGCTTCCGAGGTCAAGCAGTCTCAATTTCACTACAGGATTTATTTGCGAATGAATGCTGGGCTGGGCCACCTCGA
ATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGTTTTTAGGGGGATCTGGTCGAAAGACCGGCCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTACGACAGACAGCGCTGCCTACACGCGAATTAGCTTCCGAGGTCAAGCAGTCTCAATTTCACTACAGGATTTATTTGCGAATGAATGCTGGGCTGGGCCACCTCGA
ATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGTTTTTAGGGGGATCTGGTCGAAAGACCGGCCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAA
Protein sequenceShow/hide protein sequence
MVRQTALPTRELASEVKQSQFHYRIYLRMNAGLGHLEWREPHAGRPARTVFRGIWSKDRPAPTRLEGLRN