CuGenDBv2

Gene ID	Lsi01G011160
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribonucleoside-diphosphate reductase
Genome location	chr01:9226644..9227133
RNA-Seq Expression	Lsi01G011160
Synteny	Lsi01G011160
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0009263 - deoxyribonucleotide biosynthetic process (biological process) GO:0005971 - ribonucleoside-diphosphate reductase complex (cellular component) GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR039718 - Ribonucleoside-diphosphate reductase large subunit

Homology

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GenBank top hits

e value

%identity

Alignment

TYK12445.1 ribonucleoside-diphosphate reductase large subunit-like isoform X3 [Cucumis melo var. makuwa]

1.1e-21

94.83

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG
        +GLKTGMYYLRSQAAADAIKFTVDTS+LKEKSNNED+STKMAQMVCSLTNREDCMACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG

XP_004141975.1 ribonucleoside-diphosphate reductase large subunit [Cucumis sativus]

3.2e-21

94.83

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG
        KGLKTGMYYLRSQAAADAIKFTVD S+LKEKSN+EDDSTKMAQMVCSLTNREDCMACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG

XP_008440987.1 PREDICTED: ribonucleoside-diphosphate reductase large subunit [Cucumis melo]

1.1e-21

94.83

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG
        +GLKTGMYYLRSQAAADAIKFTVDTS+LKEKSNNED+STKMAQMVCSLTNREDCMACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG

XP_023543419.1 ribonucleoside-diphosphate reductase large subunit-like [Cucurbita pepo subsp. pepo]

7.1e-21

91.38

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG
        KGLKTGMYYLRS+AAADAIKFTVDTSMLKEK+NNEDDSTKMA+MVCSLTNRE+C+ACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG

XP_038880827.1 ribonucleoside-diphosphate reductase large subunit [Benincasa hispida]

7.1e-21

93.1

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG
        KGLKTGMYYLR +AA DAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNRE+CMACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJ45 Ribonucleoside-diphosphate reductase

1.5e-21

94.83

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG
        KGLKTGMYYLRSQAAADAIKFTVD S+LKEKSN+EDDSTKMAQMVCSLTNREDCMACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG

A0A1S3B2F2 Ribonucleoside-diphosphate reductase

5.3e-22

94.83

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG
        +GLKTGMYYLRSQAAADAIKFTVDTS+LKEKSNNED+STKMAQMVCSLTNREDCMACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG

A0A5A7SMV6 Ribonucleoside-diphosphate reductase

5.3e-22

94.83

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG
        +GLKTGMYYLRSQAAADAIKFTVDTS+LKEKSNNED+STKMAQMVCSLTNREDCMACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG

A0A5D3CLK7 Ribonucleoside-diphosphate reductase

5.3e-22

94.83

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG
        +GLKTGMYYLRSQAAADAIKFTVDTS+LKEKSNNED+STKMAQMVCSLTNREDCMACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG

A0A6J1BYB7 Ribonucleoside-diphosphate reductase

5.9e-21

91.38

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG
        KGLKTGMYYLRS+AAADAIKFTVDTSMLKEK+N+EDDSTKMAQMVCSLTNRE+C+ACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACG

SwissProt top hits

e value

%identity

Alignment

P07742 Ribonucleoside-diphosphate reductase large subunit

5.0e-09

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEK----SNNEDDSTKMAQMVCSLTNREDCMACG
        +GLKTGMYYLR++ AA+ I+FT++   LK+K       E+     A MVCSL NRE+C+ CG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEK----SNNEDDSTKMAQMVCSLTNREDCMACG

P23921 Ribonucleoside-diphosphate reductase large subunit

1.1e-08

48.39

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEK----SNNEDDSTKMAQMVCSLTNREDCMACG
        +GLKTGMYYLR++ AA+ I+FT++   LK+K       E+     A MVCSL NR++C+ CG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEK----SNNEDDSTKMAQMVCSLTNREDCMACG

P79732 Ribonucleoside-diphosphate reductase large subunit

1.4e-08

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKE---KSNNEDDSTK---MAQMVCSLTNREDCMACG
        +GLKTGMYYLR++  A+ I+FT++   LKE    +++ED+ TK    A MVCSL NR +C+ CG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKE---KSNNEDDSTK---MAQMVCSLTNREDCMACG

Q5R919 Ribonucleoside-diphosphate reductase large subunit

1.1e-08

48.39

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEK----SNNEDDSTKMAQMVCSLTNREDCMACG
        +GLKTGMYYLR++ AA+ I+FT++   LK+K       E+     A MVCSL NR++C+ CG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEK----SNNEDDSTKMAQMVCSLTNREDCMACG

Q9SJ20 Ribonucleoside-diphosphate reductase large subunit

1.0e-17

70.15

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSN---------NEDDSTKMAQMVCSLTNREDCMACG
        KGLKTGMYYLRS+AAADAIKFTVDT+MLKEK +          ED+ TK+AQMVCSLTN E+C+ACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSN---------NEDDSTKMAQMVCSLTNREDCMACG

Arabidopsis top hits

e value

%identity

Alignment

AT2G21790.1 ribonucleotide reductase 1

7.1e-19

70.15

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Query:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSN---------NEDDSTKMAQMVCSLTNREDCMACG
        KGLKTGMYYLRS+AAADAIKFTVDT+MLKEK +          ED+ TK+AQMVCSLTN E+C+ACG
Subjt:  KGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSN---------NEDDSTKMAQMVCSLTNREDCMACG

Sequences

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CDS sequence

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ATGAAGGGTTTAAAAACAGGAATGTACTATCTACGATCCCAAGCTGCGGCCGATGCAATCAAATTTACAGTTGATACATCTATGCTAAAGGAAAAATCTAACAATGAAGA
TGATAGTACAAAAATGGCACAGATGGTGTGTTCTCTAACAAATCGTGAAGACTGCATGGCTTGTGGAAGGCTTGATGCTTGTAATCCATTTACCACAGGTTTGGTGGTGG
AAATGAGTATTGTTAAATACAACTTTGCTTGTTCCTATTGA

mRNA sequence

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Protein sequence

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MKGLKTGMYYLRSQAAADAIKFTVDTSMLKEKSNNEDDSTKMAQMVCSLTNREDCMACGRLDACNPFTTGLVVEMSIVKYNFACSY

Lsi01G011160 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome