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Lsi01G011210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G011210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionWD repeat domain-containing protein 83
Genome locationchr01:9293214..9295990
RNA-Seq ExpressionLsi01G011210
SyntenyLsi01G011210
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR011047 - Quinoprotein alcohol dehydrogenase-like superfamily
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141980.1 WD repeat domain-containing protein 83 [Cucumis sativus]1.9e-0589.66Show/hide
Query:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
        ++VTSVSYHPKDKCMITASVDG IRVWKT
Subjt:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
XP_008440996.1 PREDICTED: WD repeat domain-containing protein 83 [Cucumis melo]1.9e-0589.66Show/hide
Query:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
        ++VTSVSYHPKDKCMITASVDG IRVWKT
Subjt:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
XP_022133372.1 WD repeat domain-containing protein 83 [Momordica charantia]1.9e-0589.66Show/hide
Query:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
        ++VTSVSYHPKDKCMITASVDG IRVWKT
Subjt:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
XP_022949610.1 WD repeat domain-containing protein 83 [Cucurbita moschata]1.9e-0589.66Show/hide
Query:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
        ++VTSVSYHPKDKCMITASVDG IRVWKT
Subjt:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
XP_022978013.1 WD repeat domain-containing protein 83 [Cucurbita maxima]5.4e-0586.21Show/hide
Query:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
        ++VTSVSYHPKD+CMITASVDG IRVWKT
Subjt:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
TrEMBL top hitse value%identityAlignment
A0A0A0KFA7 WD_REPEATS_REGION domain-containing protein9.0e-0689.66Show/hide
Query:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
        ++VTSVSYHPKDKCMITASVDG IRVWKT
Subjt:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
A0A1S3B1Y9 WD repeat domain-containing protein 839.0e-0689.66Show/hide
Query:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
        ++VTSVSYHPKDKCMITASVDG IRVWKT
Subjt:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
A0A6J1BWH4 WD repeat domain-containing protein 839.0e-0689.66Show/hide
Query:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
        ++VTSVSYHPKDKCMITASVDG IRVWKT
Subjt:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
A0A6J1GD83 WD repeat domain-containing protein 839.0e-0689.66Show/hide
Query:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
        ++VTSVSYHPKDKCMITASVDG IRVWKT
Subjt:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
A0A6J1IRS5 WD repeat domain-containing protein 832.6e-0586.21Show/hide
Query:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
        ++VTSVSYHPKD+CMITASVDG IRVWKT
Subjt:  AMVTSVSYHPKDKCMITASVDGMIRVWKT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G64730.1 Transducin/WD40 repeat-like superfamily protein6.1e-0777.78Show/hide
Query:  MVTSVSYHPKDKCMITASVDGMIRVWK
        +VTSVSYHPK+ CM+T+SVDG IRVWK
Subjt:  MVTSVSYHPKDKCMITASVDGMIRVWK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTCCCTTCAAGCCCCGTCTCCCAAACTTTGTTTTCAGCATTCCGAACATTAGCCACAGTAGCATTAGATCGATTGGAGAGTCTATACAGCTTCTAGGATACAA
GCATCGTTGTCTAAATACTCATGTTCAACAGTACAAGTACGACAAGATGGACATTAAGGCGATGGTGACAAGTGTGAGTTACCACCCGAAAGATAAATGTATGATAACTG
CCTCGGTAGATGGGATGATTCGGGTTTGGAAGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATATTCCCTTCAAGCCCCGTCTCCCAAACTTTGTTTTCAGCATTCCGAACATTAGCCACAGTAGCATTAGATCGATTGGAGAGTCTATACAGCTTCTAGGATACAA
GCATCGTTGTCTAAATACTCATGTTCAACAGTACAAGTACGACAAGATGGACATTAAGGCGATGGTGACAAGTGTGAGTTACCACCCGAAAGATAAATGTATGATAACTG
CCTCGGTAGATGGGATGATTCGGGTTTGGAAGACATGAGAGCCAAGAGGAGGAAGAACATGAATTTCCTCAGCTTAATAATGCACATTATGCTCTGAGGTTCTGCAGAAT
GCCAAACATAATATCTGAATGGTTTTTGACTGATCTAAAGCCTCTCTAACTTTGTCCTTGAGTTTCAACTAAGATCATAAAGTTGTTTGTTGACTATTCCAATTCCAAAC
TCGATTATGAAACCGTAATTTGTAAATTAAACGACGTTGTATGACGTTAATTCGATGTTCATTCATTGACCCTTAGAATTGAAGTTTTTATTCATTTTTATCAGTCTCTG
AATCAACAATCAGATCATCTGGTAAAGAATTGAGAAAGAGGCAATAAGCTATGGTAAGACAATTTGTTTCTCCTCAAAATCAAAGAGAGTGCAGAAACATATTGATTACA
AAGGCAAAACAAGGTTGATACCTTAAATTTGGTGTACCAAATTTACAAGAATGAAGTGGCAATTGGCTTACACTGACAAAAGTAAATGAAGATTGTCTAGAACACAAGTC
AGTAGTTGGACCTGCCTTCCAAATTCAATAAATTTCCATCATAATTTCACTTTGAAATTTCCTTCTTCA
Protein sequenceShow/hide protein sequence
MDIPFKPRLPNFVFSIPNISHSSIRSIGESIQLLGYKHRCLNTHVQQYKYDKMDIKAMVTSVSYHPKDKCMITASVDGMIRVWKT