; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G012080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G012080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionVacuolar protein sorting-associated protein 55-like protein
Genome locationchr01:10303188..10307770
RNA-Seq ExpressionLsi01G012080
SyntenyLsi01G012080
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007262 - Vps55/LEPROT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604338.1 Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita argyrosperma subsp. sororia]9.3e-6299.21Show/hide
Query:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM
        MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAM
Subjt:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM

Query:  FIEFVSFFIFVCTVLCFHRVSLEDDW
        FIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  FIEFVSFFIFVCTVLCFHRVSLEDDW

XP_008462591.2 PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucumis melo]5.4e-6299.21Show/hide
Query:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM
        MDLI AVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM
Subjt:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM

Query:  FIEFVSFFIFVCTVLCFHRVSLEDDW
        FIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  FIEFVSFFIFVCTVLCFHRVSLEDDW

XP_022926166.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita moschata]4.6e-6198.41Show/hide
Query:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM
        MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAM
Subjt:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM

Query:  FIEFVSFFIFVCTVLCFHRVSLEDDW
        FIEFVSFFIFVCTVLC HRVSLEDDW
Subjt:  FIEFVSFFIFVCTVLCFHRVSLEDDW

XP_022972744.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita maxima]1.0e-6098.43Show/hide
Query:  MDL-ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGA
        MDL ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFL SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGA
Subjt:  MDL-ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGA

Query:  MFIEFVSFFIFVCTVLCFHRVSLEDDW
        MFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  MFIEFVSFFIFVCTVLCFHRVSLEDDW

XP_023543153.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita pepo subsp. pepo]9.3e-6299.21Show/hide
Query:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM
        MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAM
Subjt:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM

Query:  FIEFVSFFIFVCTVLCFHRVSLEDDW
        FIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  FIEFVSFFIFVCTVLCFHRVSLEDDW

TrEMBL top hitse value%identityAlignment
A0A0A0KHI6 Uncharacterized protein2.6e-6299.21Show/hide
Query:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM
        MDLI AVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM
Subjt:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM

Query:  FIEFVSFFIFVCTVLCFHRVSLEDDW
        FIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  FIEFVSFFIFVCTVLCFHRVSLEDDW

A0A1S3CIW0 vacuolar protein sorting-associated protein 55 homolog isoform X12.6e-6299.21Show/hide
Query:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM
        MDLI AVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM
Subjt:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM

Query:  FIEFVSFFIFVCTVLCFHRVSLEDDW
        FIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  FIEFVSFFIFVCTVLCFHRVSLEDDW

A0A6J1EE43 vacuolar protein sorting-associated protein 55 homolog isoform X12.2e-6198.41Show/hide
Query:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM
        MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAM
Subjt:  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM

Query:  FIEFVSFFIFVCTVLCFHRVSLEDDW
        FIEFVSFFIFVCTVLC HRVSLEDDW
Subjt:  FIEFVSFFIFVCTVLCFHRVSLEDDW

A0A6J1HFY6 vacuolar protein sorting-associated protein 55 homolog isoform X16.5e-6198.39Show/hide
Query:  LISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFI
        +ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFL SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFI
Subjt:  LISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFI

Query:  EFVSFFIFVCTVLCFHRVSLEDDW
        EFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  EFVSFFIFVCTVLCFHRVSLEDDW

A0A6J1ICF8 vacuolar protein sorting-associated protein 55 homolog isoform X15.0e-6198.43Show/hide
Query:  MDL-ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGA
        MDL ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFL SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGA
Subjt:  MDL-ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGA

Query:  MFIEFVSFFIFVCTVLCFHRVSLEDDW
        MFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  MFIEFVSFFIFVCTVLCFHRVSLEDDW

SwissProt top hitse value%identityAlignment
P47111 Vacuolar protein sorting-associated protein 552.4e-0426.55Show/hide
Query:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGS---TQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEF
        +  L+   +   LL IL+CAL++N++PL   L+++L P+P   F  G+   T   +S         A FLTG      +A+P++  H  +I   +  +  
Subjt:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGS---TQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEF

Query:  VSFFIFVCTVLCF
        +   I   +++ F
Subjt:  VSFFIFVCTVLCF

Q9AST6 Vacuolar protein sorting-associated protein 55 homolog5.9e-2755.56Show/hide
Query:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSF
        +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+
Subjt:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSF

Query:  FIFVCTVL
         +F+  +L
Subjt:  FIFVCTVL

Q9UUH1 Vacuolar protein sorting-associated protein 551.1e-0425.21Show/hide
Query:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQF-LISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVS
        + GL+ + +   +L IL+CAL+ NW+PLL  + ++L P+P L     ST    +  +    +   +F  GA+     A+PI+  +  +I T A  +  V 
Subjt:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQF-LISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVS

Query:  FFIFVCTVLCFHRVSLEDD
          I    +  + +  ++ +
Subjt:  FFIFVCTVLCFHRVSLEDD

Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein4.2e-2855.56Show/hide
Query:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSF
        +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+
Subjt:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSF

Query:  FIFVCTVL
         +F+  +L
Subjt:  FIFVCTVL

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein4.2e-2855.56Show/hide
Query:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSF
        +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+
Subjt:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSF

Query:  FIFVCTVL
         +F+  +L
Subjt:  FIFVCTVL

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein4.2e-2855.56Show/hide
Query:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSF
        +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+
Subjt:  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSF

Query:  FIFVCTVL
         +F+  +L
Subjt:  FIFVCTVL

AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein2.0e-5487.61Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKFLTGASTVGSLAIPIILRHA MI+TGAM IEF SFFIF+CT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        V+CFHR SL+DDW
Subjt:  VLCFHRVSLEDDW

AT3G11530.2 Vacuolar protein sorting 55 (VPS55) family protein2.0e-5487.61Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKFLTGASTVGSLAIPIILRHA MI+TGAM IEF SFFIF+CT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        V+CFHR SL+DDW
Subjt:  VLCFHRVSLEDDW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTTATATCTGCAGTGTTAGCTGGGCTTGCGTTTATGTTTTCATCTAGCATCTTGCTACAGATTTTGGCTTGTGCACTATACAACAATTGGTGGCCTTTGTTATC
AGCTTTGATGTACGTGCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGTGGGTCCACACAGTTTCTGATTAGCCGAGATGGTGGAGGATGGATAGGTGCTGCTAAGTTCT
TGACGGGTGCGTCAACTGTTGGGAGTTTGGCAATTCCTATTATCCTCAGGCATGCTCATATGATAGACACAGGAGCCATGTTCATAGAATTCGTTTCCTTCTTCATATTT
GTTTGCACTGTGCTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGA
mRNA sequenceShow/hide mRNA sequence
TTAAAACTTGAAAAAAAAAATGGTAAACGGTATCAACAAAATCTTTAAAAAAGAGAAAAAAAAGATCCTCTCAGGAGTCAGGCGGAGCTTAAATCTTGCCTTCTTCGTCG
CGATTGGGGGCAAGAATCATCACGCATCACTGCTGCAGGAACTTTTACCTTGGTATAATGACGATGACATTGGAAGGTACAATTTCCAAATTCCCCTTATAATTTGACTG
AACTGAAATTTTTGGTGGGTATAATGTTCTTGTCGATTTGAGGATGAGCGCTTTAGAATTTCTGGGTAAATATGTCGCTTAGCTTAGTTTTATTCCAGGTTTTCGAACGA
TCGATTTTCGTTGAGTAAGAATTCATTTGTTCGCAGCTATTACTAAACACGGGACTTAAGGGAATAGTAGTTTTAATTTATTGGGGAATTGTTGTGGATTGTATCTTTTA
TCTCCTTTTTCCATGTAAAAGAGCATGTATTTTGCTCGAATTTGAATGAAGTTGTGGACGTGGGGGAAAATCATGCCTATAATAGGAAAGGCTAGTCTCGGAGGAATTTT
CATTGATCACAATTTTTTGTTGAATTTTCATTGGTGTTCTTAGTTTTTGTCAAGATAGGTGGAGAAGTGGCATGTGTAAAAGAAAAAGTAACTTCAGAATTCAATGTAAC
TAACTGTCTATTTTTGATCTCTTGGGTCTTATGGTAGTGTGTAGTCTTACAATTTCCTCTTTGTCACCCTTTGCTCATTCAAAATATATGAAACTATTTGCGTATAATCC
TGCTCCTCATATTTCTAATGAAAAATCAAGGGACTTCACAATCTTTATAAGATAGATGGACTATTGTTTTTATTGCCAATTGGTTTTGAGATGGAATCTTATGATATCTA
ATAGGGTGTCAAAGCCCATAAAGCCCAAAAGGGCATTCGGTCCAAAAAAAACAAAAAATAGGATCTGATCCAAAAATGGTGAACCTATAGAGGCACAGGCTTGAAGGGAC
ATGTCGAGTTGAGGATCCCTCATTGAAAAAATCAAGGAACCTCACAATCTTTATAAGATAGATAATCTACCCCTCTCATTGCCAAATTGTTTTGAGATGGAACTCCAAGT
TATCTAATATTTATGTACTTTACTCTTTATATAGATAGATAGTTACATGATTCCATGATCCGGAATTGAGTTTATCTCTGATTGCAAAGTGTAAGACTGTTTGAGAAGAG
ATATACTTATATCTAATAAGCTGCAAAGCTCCCCACTAATCTGTACGAAGTGATCCCATTTTCTAGCTTTGAGATATAGTATATTTGTTAACTGTTGTGAACAAGGTCGT
TGCTCAATATTATATTACTACTGCCCTTGGAGTTTCAGTTGAACCCACTGGTCCATTTGTTGTCTGTTTCCTTTATATGTATCTGTCCGTTTATTTTAACTAATGTTCTT
GATCTTCGTTGGCGGGTGCTTCTTGCTGTTCGGGGATGGATGGATCTTATATCTGCAGTGTTAGCTGGGCTTGCGTTTATGTTTTCATCTAGCATCTTGCTACAGATTTT
GGCTTGTGCACTATACAACAATTGGTGGCCTTTGTTATCAGCTTTGATGTACGTGCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGTGGGTCCACACAGTTTCTGATTA
GCCGAGATGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACGGGTGCGTCAACTGTTGGGAGTTTGGCAATTCCTATTATCCTCAGGCATGCTCATATGATAGACACA
GGAGCCATGTTCATAGAATTCGTTTCCTTCTTCATATTTGTTTGCACTGTGCTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGATAATTCCAGAAGAATATAGT
GAAGCAGATCAGTGCTGATGATTATAAAAACTTCCTGTGTTAAATTTTAATCCTCGTCTTTTGAACAGTTGATACGAGACATTGTACAACAAAAAGAAACTTGCACAGGG
GAAAGGAAACCGAGTTCAAAGTTTCTCATATGTAAATGAATCTAATGTATGATAATAGTTTTTTTTTTCCCCAACGAAATCTGTGTTATGTGAAAGGGTTAGTAATACTA
ATTTTAGGCTGAGTTTGGATTGCAATAATTCAAATAATCGTTGTCATTATGGTTTGGTAAGTTTTAATTTGGTTTAACTCTTATTTATGGTTTGGTAAGTTTTAATTTGG
TTT
Protein sequenceShow/hide protein sequence
MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIF
VCTVLCFHRVSLEDDW