CuGenDBv2

Gene ID	Lsi01G012120
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Alpha-amylase
Genome location	chr01:10353300..10354966
RNA-Seq Expression	Lsi01G012120
Synteny	Lsi01G012120
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6595177.1 hypothetical protein SDJN03_11730, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-86

81.64

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR
        M AI++STK  IR T VNSRPSILS MAS PSLVF  WNTR RQ SK S V SPC RN  L PKSS+ENTDI+PSED+PEDGVSLGTMKLPSDIDIA+F 
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR

Query:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRM
        VLLFQWANSLCQGANLPLPVPL+VDKI SGVRLGFI+IGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEI+  
Subjt:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRM

Query:  SSSDLEC
           D  C
Subjt:  SSSDLEC

XP_004143327.1 uncharacterized protein LOC101214488 [Cucumis sativus]

6.0e-91

87.56

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF
        MDAISYST QFIR  NVNSRP + S M S  PSLVFFA NTR+RQIS FS+V  PCHR PKLVPKSSDEN DIVPSEDDPEDGVSLGTMKLP D DIARF
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF

Query:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR
        +VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLL ALKKSVEISR
Subjt:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR

Query:  M
        +
Subjt:  M

XP_008462584.1 PREDICTED: uncharacterized protein LOC103500909 [Cucumis melo]

1.0e-90

87.56

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF
        MDAISYST QF R  NVNSRP +LSPM S  PSLVFFA NTRHRQIS FS+   PCHR   LVPKSSDEN DIVPSEDDPEDGVSLGTMKLP D DIARF
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF

Query:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR
        +VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT STSPIFRAIRNGRLKDQSPPGEPRIMRSLL ALKKSVEISR
Subjt:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR

Query:  M
        +
Subjt:  M

XP_022972616.1 uncharacterized protein LOC111471157 [Cucurbita maxima]

2.6e-86

84.34

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR
        M AI++STK  IR T VNSRPSILS MAS PSLVF  WNTR RQ SK S V SPC RN  L PKSS+ENTDI PSED+PEDGVSLGTMKLPSDIDIA+F 
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR

Query:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEIS
        VLLFQWANSLCQGANLPLPVPL+VDKI SGVRLGFI+IGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEI+
Subjt:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEIS

XP_038881940.1 uncharacterized protein LOC120073272 [Benincasa hispida]

3.4e-94

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR
        M+AIS+STKQFI  T VNSRP ILSPMAS PSLVF AWNTRHRQIS+FS++ SPC RN KLVPKSSDEN DIVPSEDDPEDGVSLGTMKLPSDIDIARF+
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR

Query:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRM
        VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT +T+PIFRAIRNGRL+DQSPPGEPRIMRSLL ALKKSVEISR+
Subjt:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KFD4 Uncharacterized protein

2.9e-91

87.56

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF
        MDAISYST QFIR  NVNSRP + S M S  PSLVFFA NTR+RQIS FS+V  PCHR PKLVPKSSDEN DIVPSEDDPEDGVSLGTMKLP D DIARF
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF

Query:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR
        +VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLL ALKKSVEISR
Subjt:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR

Query:  M
        +
Subjt:  M

A0A1S3CH91 uncharacterized protein LOC103500909

4.9e-91

87.56

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF
        MDAISYST QF R  NVNSRP +LSPM S  PSLVFFA NTRHRQIS FS+   PCHR   LVPKSSDEN DIVPSEDDPEDGVSLGTMKLP D DIARF
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF

Query:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR
        +VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT STSPIFRAIRNGRLKDQSPPGEPRIMRSLL ALKKSVEISR
Subjt:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR

Query:  M
        +
Subjt:  M

A0A5A7SHD0 Uncharacterized protein

4.9e-91

87.56

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF
        MDAISYST QF R  NVNSRP +LSPM S  PSLVFFA NTRHRQIS FS+   PCHR   LVPKSSDEN DIVPSEDDPEDGVSLGTMKLP D DIARF
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF

Query:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR
        +VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT STSPIFRAIRNGRLKDQSPPGEPRIMRSLL ALKKSVEISR
Subjt:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR

Query:  M
        +
Subjt:  M

A0A6J1HDQ9 uncharacterized protein LOC111463229

2.8e-86

83.33

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR
        M  I++STK  IR T VNSRPSILS MAS PSLVF  WNTR RQ SK S + SPC RN  L PKSS+ENTDI+PSED+PEDGVSLGTMKLPSDIDIA+F 
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR

Query:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEIS
        VLLFQWANSLCQGANLPLPVPL+VDKI SGVRLGFI+IGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEI+
Subjt:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEIS

A0A6J1I6G0 uncharacterized protein LOC111471157

1.3e-86

84.34

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR
        M AI++STK  IR T VNSRPSILS MAS PSLVF  WNTR RQ SK S V SPC RN  L PKSS+ENTDI PSED+PEDGVSLGTMKLPSDIDIA+F 
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR

Query:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEIS
        VLLFQWANSLCQGANLPLPVPL+VDKI SGVRLGFI+IGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEI+
Subjt:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEIS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G36145.1 unknown protein

1.2e-44

61.01

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Query:  QISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFRVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGD-GK
        Q+   +   SP      +V  +S  N  +   E   EDGVSLGTMKLP D D+ARF  LLFQWANSLCQGANLPLPVPLKVD+I  G RLGFI + D GK
Subjt:  QISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFRVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGD-GK

Query:  TEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRMS
        T+V VYIDCLVF  TT    +F+A RNGR KD++PPGE RIMRSLL ALKK+VEI+R++
Subjt:  TEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRMS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACGCCATCTCTTATTCAACAAAGCAATTCATTCGTTGCACAAATGTCAATTCTCGGCCATCTATTTTGTCTCCAATGGCGTCTCCTCCGTCACTGGTTTTCTTTGC
TTGGAACACTCGGCATCGGCAAATCTCCAAGTTCTCCGAAGTCTTAAGTCCATGCCACAGGAATCCGAAGCTGGTGCCCAAGTCTTCGGATGAGAACACCGATATTGTGC
CCTCAGAAGATGACCCTGAAGATGGAGTATCGCTTGGGACCATGAAATTGCCTTCCGACATTGACATTGCTAGATTTCGGGTCTTACTCTTCCAGTGGGCCAATAGTCTT
TGCCAGGGAGCTAACTTGCCCCTTCCAGTGCCTTTGAAGGTTGACAAAATACCCAGTGGAGTTAGACTTGGTTTTATCACAATTGGAGATGGAAAGACAGAAGTTCTCGT
GTATATAGATTGTTTGGTTTTTCCTGCTACTACCAGTACTAGTCCAATTTTTCGAGCCATAAGAAATGGACGCTTAAAGGACCAGTCACCTCCTGGTGAACCGAGAATTA
TGAGGAGTCTTTTGAGTGCTTTGAAAAAATCAGTTGAAATTTCTAGAATGTCTTCTAGTGATTTAGAATGCACAACGCTTGCTTTCCACTTTTTGGAATATCCACAACTT
GTTGATGGAGACATTGGAAAAATGCTGTGA

mRNA sequence

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Protein sequence

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MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFRVLLFQWANSL
CQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRMSSSDLECTTLAFHFLEYPQL
VDGDIGKML

Lsi01G012120 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome