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Lsi01G012150 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G012150
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSmall nuclear ribonucleoprotein G
Genome locationchr01:10382088..10383258
RNA-Seq ExpressionLsi01G012150
SyntenyLsi01G012150
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0043186 - P granule (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR044641 - Sm-like protein Lsm7/SmG
IPR034098 - Small nuclear ribonucleoprotein G
IPR010920 - LSM domain superfamily
IPR001163 - LSM domain, eukaryotic/archaea-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFQ06099.1 probable small nuclear ribonucleoprotein g [Phtheirospermum japonicum]4.3e-3298.67Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLV+DNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

KAF3452988.1 hypothetical protein FNV43_RR03421 [Rhamnella rubrinervis]4.3e-3293.67Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPQQDP
        MSRSGQPPDLKKYMDKKLQIKLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP   P
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPQQDP

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]3.3e-32100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

XP_012468163.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii]4.3e-3298.67Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

XP_022132404.1 probable small nuclear ribonucleoprotein G [Momordica charantia]3.3e-32100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

TrEMBL top hitse value%identityAlignment
A0A0A0KHH9 Small nuclear ribonucleoprotein G1.6e-32100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

A0A1S3CHS7 Small nuclear ribonucleoprotein G1.6e-32100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

A0A1U8LJV9 Small nuclear ribonucleoprotein G2.1e-3298.67Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

A0A5D3C6A2 Small nuclear ribonucleoprotein G1.6e-32100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

A0A6J1BSY9 Small nuclear ribonucleoprotein G1.6e-32100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

SwissProt top hitse value%identityAlignment
O82221 Probable small nuclear ribonucleoprotein G8.2e-3494.67Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

P24715 Probable small nuclear ribonucleoprotein G1.1e-3088Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MS SGQPP LKKYMDK+LQI L ANR+++GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

P62308 Small nuclear ribonucleoprotein G2.0e-1662.32Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALE
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALE

Q3ZBL0 Small nuclear ribonucleoprotein G2.0e-1662.32Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALE
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALE

Q9VXE0 Probable small nuclear ribonucleoprotein G3.1e-1763.77Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALE
        PP++KKYMDK++ +KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEAL+
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALE

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein6.1e-0835.44Show/hide
Query:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTVEALEPQQD
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V   +  ++
Subjt:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTVEALEPQQD

AT2G03870.2 Small nuclear ribonucleoprotein family protein6.1e-0835.44Show/hide
Query:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTVEALEPQQD
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V   +  ++
Subjt:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTVEALEPQQD

AT2G23930.1 probable small nuclear ribonucleoprotein G5.8e-3594.67Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

AT2G23930.2 probable small nuclear ribonucleoprotein G7.6e-2793.55Show/hide
Query:  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEP
Subjt:  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP

AT3G11500.1 Small nuclear ribonucleoprotein family protein7.6e-3593.33Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
        MSRSGQPPDLKKYMDKKLQIKLNANR+V+GTLRGFDQFMNLVVDNTVEVNG++KTDIGMVVIRGNS+VTVEALEP
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGGTCAGGACAGCCTCCGGATCTAAAAAAATACATGGACAAGAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCA
ATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTAATTAGGGGCAATAGTGTGGTCACTGTTGAAGCACTTG
AACCTCAGCAAGATCCAGTTATATTACAATCCAAGTGTATGAGTACCACTGTATCACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGGTCAGGACAGCCTCCGGATCTAAAAAAATACATGGACAAGAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCA
ATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTAATTAGGGGCAATAGTGTGGTCACTGTTGAAGCACTTG
AACCTCAGCAAGATCCAGTTATATTACAATCCAAGTGTATGAGTACCACTGTATCACTTTGA
Protein sequenceShow/hide protein sequence
MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPQQDPVILQSKCMSTTVSL