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Lsi01G012410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G012410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S acidic ribosomal protein P2-like
Genome locationchr01:10575593..10577324
RNA-Seq ExpressionLsi01G012410
SyntenyLsi01G012410
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604363.1 hypothetical protein SDJN03_04972, partial [Cucurbita argyrosperma subsp. sororia]6.6e-3177.67Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE
        +VAAYLLAVLGGNTHPS++DI AILGSVG+EV+DERIELL SQVKGKD AE++A GREKMAS+ S GSAIPVAAGG   AAS  VAAEPV EDKKEV EE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE

Query:  SDE
        S++
Subjt:  SDE

XP_004143310.2 60S acidic ribosomal protein P2 [Cucumis sativus]3.8e-3483.81Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAG--GAAAAASVVVAAEPVKEDKKEVV
        +VAAYLLA+LGGNTHPSI DIKAIL SVGVE EDERIELL SQVKGKD AELVACGREKMA VP GGSAIPVAAG      AA+ VVAAEPVKEDKKEVV
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAG--GAAAAASVVVAAEPVKEDKKEVV

Query:  EESDE
        EESDE
Subjt:  EESDE

XP_022925971.1 60S acidic ribosomal protein P2-like [Cucurbita moschata]3.0e-3178.64Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE
        +VAAYLLAVLGGNTHPS++DI AILGSVG+EVEDERIELL SQVKGKD AE++A GREKMAS+ S GSAIPVAAGG   AAS  VAAEPV EDKKEV EE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE

Query:  SDE
        S++
Subjt:  SDE

XP_022977389.1 60S acidic ribosomal protein P2-like [Cucurbita maxima]5.1e-3178.64Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE
        +VAAYLLA LGGNTHPS++DI AILGSVG+EVEDERIELL SQVKGKD AE++A GREKMAS+ S GSAIPVAAGG   AAS  VAAEPVKEDKKEV EE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE

Query:  SDE
        S++
Subjt:  SDE

XP_023543240.1 60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo]1.1e-3077.67Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE
        +VAAYLLAVLGGNTHPS++DI AILGSVG+EVEDERIELL SQVKG+D AE++A GREKMAS+ S GSAIPVAAGG   AAS  VAAEPVKEDKKE  EE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE

Query:  SDE
        S++
Subjt:  SDE

TrEMBL top hitse value%identityAlignment
A0A0A0KKF6 Uncharacterized protein1.8e-3483.81Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAG--GAAAAASVVVAAEPVKEDKKEVV
        +VAAYLLA+LGGNTHPSI DIKAIL SVGVE EDERIELL SQVKGKD AELVACGREKMA VP GGSAIPVAAG      AA+ VVAAEPVKEDKKEVV
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAG--GAAAAASVVVAAEPVKEDKKEVV

Query:  EESDE
        EESDE
Subjt:  EESDE

A0A1U7YTX1 60S acidic ribosomal protein P2-like4.1e-2668.52Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPS-GGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVE
        V+AAYLLAVLGGN  PS DD+K ILGSVG E +D+RIELL S+VKGKD  EL+A GREK+ASVPS GG+AI VAAGG  AAA+   AAEP KE+K E  E
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPS-GGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVE

Query:  ESDELVEF
        ESDE + F
Subjt:  ESDELVEF

A0A6J1CQB9 60S acidic ribosomal protein P2A-like5.1e-2973.83Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAI----PVAAGGAAAAASVVVAAEPVKEDKKE
        +VAAYLLAVLGGN  PS+D IKAILGSVGVEVED+RIELL SQVKG D AE+VACGREKMAS+P  G+AI    P AAGGAA A + V A    KEDKKE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAI----PVAAGGAAAAASVVVAAEPVKEDKKE

Query:  VVEESDE
        VVEESDE
Subjt:  VVEESDE

A0A6J1EDL3 60S acidic ribosomal protein P2-like1.4e-3178.64Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE
        +VAAYLLAVLGGNTHPS++DI AILGSVG+EVEDERIELL SQVKGKD AE++A GREKMAS+ S GSAIPVAAGG   AAS  VAAEPV EDKKEV EE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE

Query:  SDE
        S++
Subjt:  SDE

A0A6J1IM66 60S acidic ribosomal protein P2-like2.5e-3178.64Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE
        +VAAYLLA LGGNTHPS++DI AILGSVG+EVEDERIELL SQVKGKD AE++A GREKMAS+ S GSAIPVAAGG   AAS  VAAEPVKEDKKEV EE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE

Query:  SDE
        S++
Subjt:  SDE

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B1.3e-2153.27Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE
        V+AAYLLAVLGGNT P+ DD+K+IL SVG E ++E++E L +++K KD  E++A GRE+++SVPSGG AI + A  A A      A E  KE+K E  EE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE

Query:  SDELVEF
        SDE + F
Subjt:  SDELVEF

P41099 60S acidic ribosomal protein P21.8e-2358.33Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGS-AIPVAAGGAAAAASVVVAAEPVKEDKKEVVE
        V+AA+LLA+LGGNT P+ +D+K+IL SVG + +D++IELL SQVKGKD  EL+A GRE++ASVPSGG  A+  AAGG    A    A EP KE+K E  E
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGS-AIPVAAGGAAAAASVVVAAEPVKEDKKEVVE

Query:  ESDELVEF
        ESDE + F
Subjt:  ESDELVEF

P46252 60S acidic ribosomal protein P2A2.2e-2159.43Show/hide
Query:  VAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEES
        VAAYLLAVL GN  PS DD+ AIL SVG EV++E++ELL SQ+ GKD  EL+A GREK ASVP GG  + VAA  A AA     AAE  KE+K E  EES
Subjt:  VAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEES

Query:  DELVEF
        D+ + F
Subjt:  DELVEF

Q9LXM8 60S acidic ribosomal protein P2-41.9e-2056.76Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGG----SAIPVAAGGAAAAASVVVAAEPVKEDKKE
        V AA+LLAVLGGN +PS D+IK I+G+VG +V+ E IELL  +V GKD AEL+A GREK+ASVPSGG    SA P + GG AAA +        KE KKE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGG----SAIPVAAGGAAAAASVVVAAEPVKEDKKE

Query:  VVEESDELVEF
          EESD+ + F
Subjt:  VVEESDELVEF

Q9SLF7 60S acidic ribosomal protein P2-22.2e-2158.93Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGS-----AIPVAAGGAAAAASVVVAAEPVKEDKK
        VVAAYLLAVL G   P+  DIK ILGSVG E ED +IELL  +VKGKD AEL+A GREK+ASVPSGG      A   + GG    AS   AAE  KE+KK
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGS-----AIPVAAGGAAAAASVVVAAEPVKEDKK

Query:  EVVEESDELVEF
        E  EESD+ + F
Subjt:  EVVEESDELVEF

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family1.6e-2258.93Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGS-----AIPVAAGGAAAAASVVVAAEPVKEDKK
        VVAAYLLAVL G   P+  DIK ILGSVG E ED +IELL  +VKGKD AEL+A GREK+ASVPSGG      A   + GG    AS   AAE  KE+KK
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGS-----AIPVAAGGAAAAASVVVAAEPVKEDKK

Query:  EVVEESDELVEF
        E  EESD+ + F
Subjt:  EVVEESDELVEF

AT2G27710.2 60S acidic ribosomal protein family1.6e-2258.93Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGS-----AIPVAAGGAAAAASVVVAAEPVKEDKK
        VVAAYLLAVL G   P+  DIK ILGSVG E ED +IELL  +VKGKD AEL+A GREK+ASVPSGG      A   + GG    AS   AAE  KE+KK
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGS-----AIPVAAGGAAAAASVVVAAEPVKEDKK

Query:  EVVEESDELVEF
        E  EESD+ + F
Subjt:  EVVEESDELVEF

AT2G27710.3 60S acidic ribosomal protein family1.6e-2258.93Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGS-----AIPVAAGGAAAAASVVVAAEPVKEDKK
        VVAAYLLAVL G   P+  DIK ILGSVG E ED +IELL  +VKGKD AEL+A GREK+ASVPSGG      A   + GG    AS   AAE  KE+KK
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGS-----AIPVAAGGAAAAASVVVAAEPVKEDKK

Query:  EVVEESDELVEF
        E  EESD+ + F
Subjt:  EVVEESDELVEF

AT2G27710.4 60S acidic ribosomal protein family6.0e-2257.94Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE
        VVAAYLLAVL G   P+  DIK ILGSVG E ED +IELL  +VKGKD AEL+A GREK+ASVPSGG A                AAE  KE+KKE  EE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVKEDKKEVVEE

Query:  SDELVEF
        SD+ + F
Subjt:  SDELVEF

AT3G44590.2 60S acidic ribosomal protein family1.3e-2156.76Show/hide
Query:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGG----SAIPVAAGGAAAAASVVVAAEPVKEDKKE
        V AA+LLAVLGGN +PS D+IK I+G+VG +V+ E IELL  +V GKD AEL+A GREK+ASVPSGG    SA P + GG AAA +        KE KKE
Subjt:  VVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGG----SAIPVAAGGAAAAASVVVAAEPVKEDKKE

Query:  VVEESDELVEF
          EESD+ + F
Subjt:  VVEESDELVEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATGCGTAGAAGATAATCATGGATTATTATCCAAAAACCTCTGTCTTCGATCGGTTGTTGCGGCTTATTTGTTGGCTGTTTTGGGTGGAAATACTCACCCCTCCAT
TGATGATATTAAAGCCATTCTCGGCTCTGTTGGAGTTGAGGTTGAAGATGAAAGAATCGAGTTGCTTTTTTCCCAAGTTAAGGGCAAAGATTTTGCAGAGCTTGTAGCCT
GTGGAAGGGAGAAGATGGCATCTGTCCCTTCTGGTGGTTCTGCAATTCCTGTAGCTGCCGGCGGTGCTGCTGCTGCCGCGTCTGTCGTTGTTGCTGCCGAGCCTGTCAAA
GAGGACAAGAAAGAAGTTGTTGAAGAGTCGGATGAACTGGTTGAATTTATATTTGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTATGCGTAGAAGATAATCATGGATTATTATCCAAAAACCTCTGTCTTCGATCGGTTGTTGCGGCTTATTTGTTGGCTGTTTTGGGTGGAAATACTCACCCCTCCAT
TGATGATATTAAAGCCATTCTCGGCTCTGTTGGAGTTGAGGTTGAAGATGAAAGAATCGAGTTGCTTTTTTCCCAAGTTAAGGGCAAAGATTTTGCAGAGCTTGTAGCCT
GTGGAAGGGAGAAGATGGCATCTGTCCCTTCTGGTGGTTCTGCAATTCCTGTAGCTGCCGGCGGTGCTGCTGCTGCCGCGTCTGTCGTTGTTGCTGCCGAGCCTGTCAAA
GAGGACAAGAAAGAAGTTGTTGAAGAGTCGGATGAACTGGTTGAATTTATATTTGTATAA
Protein sequenceShow/hide protein sequence
MLCVEDNHGLLSKNLCLRSVVAAYLLAVLGGNTHPSIDDIKAILGSVGVEVEDERIELLFSQVKGKDFAELVACGREKMASVPSGGSAIPVAAGGAAAAASVVVAAEPVK
EDKKEVVEESDELVEFIFV