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Lsi01G012420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G012420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S acidic ribosomal protein P2-like
Genome locationchr01:10579425..10582780
RNA-Seq ExpressionLsi01G012420
SyntenyLsi01G012420
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025275.1 60S acidic ribosomal protein P2-like [Cucumis melo var. makuwa]1.1e-1480Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +K KD+TELIACGREKMASLPTG +VAA V A  STVD AAPVAAEAKKEEK+DA+DSDE
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

XP_004143377.1 60S acidic ribosomal protein P2 [Cucumis sativus]7.7e-1376.67Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +K KD+TELIA  REKMASLPTG +VAAAV A  STVD AAPV AEAKKEEK+DA+DSDE
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

XP_016902906.1 PREDICTED: 60S acidic ribosomal protein P2-like [Cucumis melo]1.1e-1480Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +K KD+TELIACGREKMASLPTG +VAA V A  STVD AAPVAAEAKKEEK+DA+DSDE
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

XP_028946317.1 60S acidic ribosomal protein P2-2-like [Malus domestica]2.4e-0662.3Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEK-EDAVDSDE
        +K KD+TELIA GREK+AS+P GG  A AV AT S    AAP AAEAKKEEK E+  +SD+
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEK-EDAVDSDE

XP_030926970.1 60S acidic ribosomal protein P2-like [Quercus lobata]4.1e-0654.69Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGA-----TASTVDVAAPVAAEAKKEEKEDAVDSD
        +K KD+TELIA GREK+AS+P+GG  A AV       T +T   AAP AAE+KKEEKE++ + D
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGA-----TASTVDVAAPVAAEAKKEEKEDAVDSD

TrEMBL top hitse value%identityAlignment
A0A0A0KEV8 Uncharacterized protein3.7e-1376.67Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +K KD+TELIA  REKMASLPTG +VAAAV A  STVD AAPV AEAKKEEK+DA+DSDE
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

A0A1S4E3U5 60S acidic ribosomal protein P2-like5.2e-1580Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +K KD+TELIACGREKMASLPTG +VAA V A  STVD AAPVAAEAKKEEK+DA+DSDE
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

A0A5A7SLD3 60S acidic ribosomal protein P2-like5.2e-1580Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +K KD+TELIACGREKMASLPTG +VAA V A  STVD AAPVAAEAKKEEK+DA+DSDE
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

A0A7J6VW13 60S acidic ribosomal protein P22.0e-0656.67Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +K KD+TEL+A GREK+AS+P+GG    AV A+      AAP AAEAKKEEK +  DS+E
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

A0A7N2M5M5 Uncharacterized protein2.0e-0654.69Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGA-----TASTVDVAAPVAAEAKKEEKEDAVDSD
        +K KD+TELIA GREK+AS+P+GG  A AV       T +T   AAP AAE+KKEEKE++ + D
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGA-----TASTVDVAAPVAAEAKKEEKEDAVDSD

SwissProt top hitse value%identityAlignment
O14317 60S acidic ribosomal protein P2-C2.7e-0552.63Show/hide
Query:  KDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        KD+ ELIA G EK+A++P+GG  AAA  A A     AAP A EA KEE ++  +SDE
Subjt:  KDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

O24415 60S acidic ribosomal protein P2B1.2e-0552.46Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEK-EDAVDSDE
        +KDKD+TE+IA GRE+++S+P+GG  A  +GA A+     A  A EAKKEEK E+  +SDE
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEK-EDAVDSDE

P08094 60S acidic ribosomal protein P2-alpha2.1e-0550Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +  KD+ ELIA G EK+A++PTGG  +AA  A A     AAP A EA KEE ++  +SDE
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

P41099 60S acidic ribosomal protein P22.5e-0649.18Show/hide
Query:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDEI
        +K KD+TELIA GRE++AS+P+GG VA A  A     D  A  A E KKEEK +    +E+
Subjt:  MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDEI

Q9LUK2 60S acidic ribosomal protein P2-52.1e-0549.18Show/hide
Query:  MKDKDVTELIACGREKMASLPT-GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +KD+DVTELIA GREKMA+L + GG VA A G        A P + E+KK+E+E     D+
Subjt:  MKDKDVTELIACGREKMASLPT-GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

Arabidopsis top hitse value%identityAlignment
AT2G27720.1 60S acidic ribosomal protein family1.1e-0445.16Show/hide
Query:  MKDKDVTELIACGREKMASLPT--GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +K KD+ ELIA GREK+AS+P+  GG VA A   +       AP A   K+E+KE+  +SD+
Subjt:  MKDKDVTELIACGREKMASLPT--GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

AT2G27720.2 60S acidic ribosomal protein family1.1e-0445.16Show/hide
Query:  MKDKDVTELIACGREKMASLPT--GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +K KD+ ELIA GREK+AS+P+  GG VA A   +       AP A   K+E+KE+  +SD+
Subjt:  MKDKDVTELIACGREKMASLPT--GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE

AT3G44590.1 60S acidic ribosomal protein family7.4e-0652.73Show/hide
Query:  KDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPV-AAEAKKEEKEDAVD
        KD+ ELIA GREK+AS+P+GG VA +   ++     AAP    EAKKEEKE++ D
Subjt:  KDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPV-AAEAKKEEKEDAVD

AT3G44590.2 60S acidic ribosomal protein family7.4e-0652.73Show/hide
Query:  KDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPV-AAEAKKEEKEDAVD
        KD+ ELIA GREK+AS+P+GG VA +   ++     AAP    EAKKEEKE++ D
Subjt:  KDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPV-AAEAKKEEKEDAVD

AT5G40040.1 60S acidic ribosomal protein family1.5e-0649.18Show/hide
Query:  MKDKDVTELIACGREKMASLPT-GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE
        +KD+DVTELIA GREKMA+L + GG VA A G        A P + E+KK+E+E     D+
Subjt:  MKDKDVTELIACGREKMASLPT-GGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGACAAGGATGTAACTGAGCTTATTGCCTGTGGGAGAGAGAAGATGGCATCATTACCTACCGGTGGCCTCGTTGCAGCTGCTGTGGGCGCAACGGCCTCTACCGT
CGATGTTGCTGCTCCTGTTGCAGCTGAGGCTAAGAAAGAGGAGAAAGAAGATGCTGTGGACTCTGATGAAATTCTGCTCAACTTTCCAATGACATACATGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGACAAGGATGTAACTGAGCTTATTGCCTGTGGGAGAGAGAAGATGGCATCATTACCTACCGGTGGCCTCGTTGCAGCTGCTGTGGGCGCAACGGCCTCTACCGT
CGATGTTGCTGCTCCTGTTGCAGCTGAGGCTAAGAAAGAGGAGAAAGAAGATGCTGTGGACTCTGATGAAATTCTGCTCAACTTTCCAATGACATACATGATGTAA
Protein sequenceShow/hide protein sequence
MKDKDVTELIACGREKMASLPTGGLVAAAVGATASTVDVAAPVAAEAKKEEKEDAVDSDEILLNFPMTYMM