; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G012460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G012460
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRAB6-interacting golgin
Genome locationchr01:10631006..10632312
RNA-Seq ExpressionLsi01G012460
SyntenyLsi01G012460
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
InterPro domainsIPR007033 - RAB6-interacting golgin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025281.1 putative DNA double-strand break repair Rad50 ATPase isoform X2 [Cucumis melo var. makuwa]1.3e-6385.29Show/hide
Query:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL
        MQ++QN PQQLQ ML+NS N SFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRL++ REELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS
        NKELKPLG      EKEYKDALD FNEKNNEKVQLISKLME      MVGESEKLRLKRLEELSKHVD++
Subjt:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS

XP_004143305.1 uncharacterized protein LOC101209289 [Cucumis sativus]4.7e-6988.82Show/hide
Query:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL
        MQS+QN PQQLQAML+NSAN SFSSKEDDEMSKSALAAFREKEEEIDRMRTEL+NKLQ+RLGRVQEESRRL++ REELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS
        NKELKPLG+TCQKKEKEYKDALD FNEKNNEKVQLISKLME      MVGESEKLRLKRLEELSKHVD++
Subjt:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS

XP_008462544.1 PREDICTED: uncharacterized protein LOC103500877 [Cucumis melo]6.2e-6988.24Show/hide
Query:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL
        MQ++QN PQQLQ ML+NS N SFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRL++ REELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS
        NKELKPLG+TCQKKEKEYKDALD FNEKNNEKVQLISKLME      MVGESEKLRLKRLEELSKHVD++
Subjt:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS

XP_023543803.1 uncharacterized protein LOC111803564 [Cucurbita pepo subsp. pepo]9.5e-6279.88Show/hide
Query:  MQSEQNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALN
        MQ+EQNPQQLQ ML NS N SFSSKED+EMSKSAL+AFREKEEEI+RMRTEL  KLQ RLGRV+EESRRL + REELE I GDP RKEIGQIRK+ID LN
Subjt:  MQSEQNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALN

Query:  KELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS
        KELKPLG  CQKKEKEYKDALD FNEKNNEKVQ ISKLME      MVGESE++RLKRLEELSKHVD++
Subjt:  KELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS

XP_038882826.1 uncharacterized protein LOC120073968 isoform X1 [Benincasa hispida]2.1e-6987.57Show/hide
Query:  MQSEQNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALN
        MQS+QNPQQLQAMLDNSA+ SFSSKEDD+MSKSALAAFREKEEEIDRMR +LHNKLQVRLGRVQEESRRL + REEL+AI GDPMRKEIGQIRKKIDALN
Subjt:  MQSEQNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALN

Query:  KELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS
        KELKPLG+TCQKKEKEYKDALD FNEKNNEKVQLISKLME      MVGESEKLRLKRLEELSKHVD++
Subjt:  KELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS

TrEMBL top hitse value%identityAlignment
A0A0A0KHE9 RAB6-interacting golgin2.3e-6988.82Show/hide
Query:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL
        MQS+QN PQQLQAML+NSAN SFSSKEDDEMSKSALAAFREKEEEIDRMRTEL+NKLQ+RLGRVQEESRRL++ REELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS
        NKELKPLG+TCQKKEKEYKDALD FNEKNNEKVQLISKLME      MVGESEKLRLKRLEELSKHVD++
Subjt:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS

A0A1S3CIS0 RAB6-interacting golgin3.0e-6988.24Show/hide
Query:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL
        MQ++QN PQQLQ ML+NS N SFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRL++ REELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS
        NKELKPLG+TCQKKEKEYKDALD FNEKNNEKVQLISKLME      MVGESEKLRLKRLEELSKHVD++
Subjt:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS

A0A5A7SM04 RAB6-interacting golgin6.4e-6485.29Show/hide
Query:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL
        MQ++QN PQQLQ ML+NS N SFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRL++ REELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSEQN-PQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS
        NKELKPLG      EKEYKDALD FNEKNNEKVQLISKLME      MVGESEKLRLKRLEELSKHVD++
Subjt:  NKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS

A0A6J1EJF7 RAB6-interacting golgin3.0e-6179.29Show/hide
Query:  MQSEQNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALN
        MQ+EQNPQQLQ ML NS N SFSSKED+EMSKSAL+AFREKEEEI+RMRTEL  KLQ RLGRV+EESRRL + REELE I GDP RKEIGQIRK+ID LN
Subjt:  MQSEQNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALN

Query:  KELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS
        KELKPLG  CQKKEKEYKDALD FNEKNNEKV  ISKLME      MVGESE++RLKRLEELSKHVD++
Subjt:  KELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS

A0A6J1IS07 RAB6-interacting golgin4.6e-6279.88Show/hide
Query:  MQSEQNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALN
        MQ+EQNPQQLQ ML NS N SFSSKED+EMSKSAL+AFREKEEEI+RMRTEL  KLQ RLGRV+EESRRL + REELE I GDP RKEIGQIRK+ID LN
Subjt:  MQSEQNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALN

Query:  KELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS
        KELKPLG  CQKKEKEYKDALD FNEKNNEKVQ ISKLME      MVGESE++RLKRLEELSKHVD++
Subjt:  KELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G36410.1 Family of unknown function (DUF662)1.2e-4357.23Show/hide
Query:  QSEQNP---QQLQAMLDNSANFSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKK
        QS+  P   QQ   M+ ++ + SFS   S+ED+EM++SAL+AFR KE+EI++ R E+  ++Q +LGRV++E++RL+T REELE++  DPMRKE+  +RKK
Subjt:  QSEQNP---QQLQAMLDNSANFSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKK

Query:  IDALNKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDS
        ID++NKELKPLG T QKKE+EYK+ALD FNEKN EKVQLI+KLME   +  +VGESEKLR+ +LEELSK +++
Subjt:  IDALNKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDS

AT2G36410.2 Family of unknown function (DUF662)2.1e-4357.23Show/hide
Query:  QSEQNP---QQLQAMLDNSANFSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKK
        QS+  P   QQ   M+ ++ + SFS   S+ED+EM++SAL+AFR KE+EI++ R E+  ++Q +LGRV++E++RL+T REELE++  DPMRKE+  +RKK
Subjt:  QSEQNP---QQLQAMLDNSANFSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKK

Query:  IDALNKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDS
        ID++NKELKPLG T QKKE+EYK+ALD FNEKN EKVQLI+KLME      +VGESEKLR+ +LEELSK +++
Subjt:  IDALNKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDS

AT3G09980.1 Family of unknown function (DUF662)8.6e-4560.49Show/hide
Query:  QQLQAMLDNSANFSFS-SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALNKELKPL
        +QL A L  S +FS   SKED+EMS++AL+AFR KEEEI++ + E+  ++Q +LGRV+EE++RL   REELE +  DPMRKE+  +RKKID++NKELKPL
Subjt:  QQLQAMLDNSANFSFS-SKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALNKELKPL

Query:  GLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDS
        G T QKKE+EYK+AL+ FNEKN EKVQLI++LME      +VGESEK+R+K+LEELSK++DS
Subjt:  GLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDS

AT3G52920.1 Family of unknown function (DUF662)1.6e-4358.54Show/hide
Query:  QNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALNKELK
        Q PQQ+ ++  +S      SKED+EM++SAL+AFR KE+EI++ + E+  +++ +LGRV+EE+RRL + REELE +  DPMRKE+  +RKKID++NKELK
Subjt:  QNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALNKELK

Query:  PLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDS
        PLG T QKKE+EYK+ALD FNEKN EKVQLI+KLME   +  +VGESEKLRLK+L+ELS+ +D+
Subjt:  PLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDS

AT3G52920.2 Family of unknown function (DUF662)3.6e-4358.54Show/hide
Query:  QNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALNKELK
        Q PQQ+ ++  +S      SKED+EM++SAL+AFR KE+EI++ + E+  +++ +LGRV+EE+RRL + REELE +  DPMRKE+  +RKKID++NKELK
Subjt:  QNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALNKELK

Query:  PLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDS
        PLG T QKKE+EYK+ALD FNEKN EKVQLI+KLME      +VGESEKLRLK+L+ELS+ +D+
Subjt:  PLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAGCGAGCAGAATCCACAGCAACTTCAAGCAATGTTAGATAATTCTGCAAATTTTAGTTTCAGTAGCAAAGAAGACGATGAGATGTCCAAATCTGCGCTTGCGGC
TTTCAGGGAAAAGGAAGAGGAAATCGACCGGATGAGGACCGAGCTTCATAACAAACTTCAAGTTCGTCTCGGCCGAGTCCAGGAAGAATCAAGGCGTTTGACTACTTTTC
GAGAGGAACTTGAAGCCATAGGGGGGGATCCAATGAGGAAGGAAATTGGACAAATTCGTAAGAAAATCGATGCCCTAAACAAGGAATTAAAGCCTCTCGGACTAACATGC
CAAAAGAAGGAGAAAGAGTACAAAGATGCCCTTGATGTTTTTAATGAAAAGAACAACGAAAAAGTACAGTTAATATCAAAACTAATGGAGGTTAGTTTCGTAAATTGGAT
GGTTGGTGAAAGTGAAAAGCTGAGGCTAAAGAGGTTGGAAGAATTGAGTAAGCATGTGGATTCTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAGCGAGCAGAATCCACAGCAACTTCAAGCAATGTTAGATAATTCTGCAAATTTTAGTTTCAGTAGCAAAGAAGACGATGAGATGTCCAAATCTGCGCTTGCGGC
TTTCAGGGAAAAGGAAGAGGAAATCGACCGGATGAGGACCGAGCTTCATAACAAACTTCAAGTTCGTCTCGGCCGAGTCCAGGAAGAATCAAGGCGTTTGACTACTTTTC
GAGAGGAACTTGAAGCCATAGGGGGGGATCCAATGAGGAAGGAAATTGGACAAATTCGTAAGAAAATCGATGCCCTAAACAAGGAATTAAAGCCTCTCGGACTAACATGC
CAAAAGAAGGAGAAAGAGTACAAAGATGCCCTTGATGTTTTTAATGAAAAGAACAACGAAAAAGTACAGTTAATATCAAAACTAATGGAGGTTAGTTTCGTAAATTGGAT
GGTTGGTGAAAGTGAAAAGCTGAGGCTAAAGAGGTTGGAAGAATTGAGTAAGCATGTGGATTCTTCCTAA
Protein sequenceShow/hide protein sequence
MQSEQNPQQLQAMLDNSANFSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVRLGRVQEESRRLTTFREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGLTC
QKKEKEYKDALDVFNEKNNEKVQLISKLMEVSFVNWMVGESEKLRLKRLEELSKHVDSS