; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G012510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G012510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein ROS1 isoform X4
Genome locationchr01:10703542..10704701
RNA-Seq ExpressionLsi01G012510
SyntenyLsi01G012510
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0080111 - DNA demethylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0019104 - DNA N-glycosylase activity (molecular function)
GO:0035514 - DNA demethylase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025287.1 protein ROS1 isoform X4 [Cucumis melo var. makuwa]2.0e-1783.33Show/hide
Query:  MELTSKLMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGK
        + + S L RYLLIMILA TQLMFLGVGYGSSQGGQCTLEHPYQQYSRVY  KRFK ASGK
Subjt:  MELTSKLMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGK
XP_028060399.1 protein ROS1A isoform X3 [Camellia sinensis]1.5e-0457.14Show/hide
Query:  LMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGKPL
        L R LL M LA TQL FLG+G+G  Q   CTLE  YQQY +VY RK F  A G+ L
Subjt:  LMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGKPL
TrEMBL top hitse value%identityAlignment
A0A5A7SKP4 Protein ROS1 isoform X49.6e-1883.33Show/hide
Query:  MELTSKLMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGK
        + + S L RYLLIMILA TQLMFLGVGYGSSQGGQCTLEHPYQQYSRVY  KRFK ASGK
Subjt:  MELTSKLMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTTACTTCCAAGTTAATGAGGTATTTGCTGATCATGATTCTAGCCTCAACCCAATTGATGTTCCTAGGAGTTGGTTATGGAAGCTCTCAAGGCGGACAGTGTAC
TTTGGAACATCCATACCAACAATATTCAAGGGTTTATCTACGGAAGAGATTCAAGGTTGCTTCTGGAAAGCCACTGTCTAATCCCCCACCTTCTGCCATGACTAAACTAC
AACCAAGTAGAGTGTTAATTATCGAAAGGAAACCCTTTTTGATCGAAGTTGATCCAACTTCCAGAGGCTCCCGAGTCAGACTCACCGAATCATCCAAAGACAAAGCCTTC
TCCATTTCACTAAGATGGATCACAAATATTTTCAAGCCTCTCTTTACTTTGCCACTTAACCAGAATTCTTCATGGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAACTTACTTCCAAGTTAATGAGGTATTTGCTGATCATGATTCTAGCCTCAACCCAATTGATGTTCCTAGGAGTTGGTTATGGAAGCTCTCAAGGCGGACAGTGTAC
TTTGGAACATCCATACCAACAATATTCAAGGGTTTATCTACGGAAGAGATTCAAGGTTGCTTCTGGAAAGCCACTGTCTAATCCCCCACCTTCTGCCATGACTAAACTAC
AACCAAGTAGAGTGTTAATTATCGAAAGGAAACCCTTTTTGATCGAAGTTGATCCAACTTCCAGAGGCTCCCGAGTCAGACTCACCGAATCATCCAAAGACAAAGCCTTC
TCCATTTCACTAAGATGGATCACAAATATTTTCAAGCCTCTCTTTACTTTGCCACTTAACCAGAATTCTTCATGGAACTAA
Protein sequenceShow/hide protein sequence
MELTSKLMRYLLIMILASTQLMFLGVGYGSSQGGQCTLEHPYQQYSRVYLRKRFKVASGKPLSNPPPSAMTKLQPSRVLIIERKPFLIEVDPTSRGSRVRLTESSKDKAF
SISLRWITNIFKPLFTLPLNQNSSWN