CuGenDBv2

Gene ID	Lsi01G012830
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	protein SHOOT GRAVITROPISM 6
Genome location	chr01:11102715..11111620
RNA-Seq Expression	Lsi01G012830
Synteny	Lsi01G012830
Gene Ontology terms	GO:0016757 - transferase activity, transferring glycosyl groups (molecular function)
InterPro domains	IPR016024 - Armadillo-type fold

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6604385.1 Protein SHOOT GRAVITROPISM 6, partial [Cucurbita argyrosperma subsp. sororia]

7.9e-59

72.19

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEEIYLHLGGPSSALPAMVQILADFASSD                                AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL              LHNVLNTSLHSESGPPLLDFE    + S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

XP_022925795.1 protein SHOOT GRAVITROPISM 6 isoform X1 [Cucurbita moschata]

7.9e-59

72.19

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEEIYLHLGGPSSALPAMVQILADFASSD                                AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL              LHNVLNTSLHSESGPPLLDFE    + S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

XP_022925796.1 protein SHOOT GRAVITROPISM 6 isoform X2 [Cucurbita moschata]

7.9e-59

72.19

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEEIYLHLGGPSSALPAMVQILADFASSD                                AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL              LHNVLNTSLHSESGPPLLDFE    + S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

XP_023543667.1 protein SHOOT GRAVITROPISM 6 isoform X2 [Cucurbita pepo subsp. pepo]

7.9e-59

72.19

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEEIYLHLGGPSSALPAMVQILADFASSD                                AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL              LHNVLNTSLHSESGPPLLDFE    + S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

XP_023543668.1 protein SHOOT GRAVITROPISM 6 isoform X3 [Cucurbita pepo subsp. pepo]

7.9e-59

72.19

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEEIYLHLGGPSSALPAMVQILADFASSD                                AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL              LHNVLNTSLHSESGPPLLDFE    + S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CH33 protein SHOOT GRAVITROPISM 6

1.5e-58

71.12

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEE+YLHLGGPSSALPAMVQILADFASSD                                AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWAASSDLKVRIS+VEALGQIVGLITRAQLKAALPRLIPTMLEL              LHNVLNTSLHSESGPPLLDFE    + S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

A0A5D3C634 Protein SHOOT GRAVITROPISM 6

1.5e-58

71.12

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEE+YLHLGGPSSALPAMVQILADFASSD                                AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWAASSDLKVRIS+VEALGQIVGLITRAQLKAALPRLIPTMLEL              LHNVLNTSLHSESGPPLLDFE    + S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

A0A6J1ECM0 protein SHOOT GRAVITROPISM 6 isoform X3

3.8e-59

72.19

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEEIYLHLGGPSSALPAMVQILADFASSD                                AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL              LHNVLNTSLHSESGPPLLDFE    + S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

A0A6J1ED60 protein SHOOT GRAVITROPISM 6 isoform X2

3.8e-59

72.19

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEEIYLHLGGPSSALPAMVQILADFASSD                                AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL              LHNVLNTSLHSESGPPLLDFE    + S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

A0A6J1EJ78 protein SHOOT GRAVITROPISM 6 isoform X1

3.8e-59

72.19

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEEIYLHLGGPSSALPAMVQILADFASSD                                AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSD--------------------------------AIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL              LHNVLNTSLHSESGPPLLDFE    + S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

SwissProt top hits

e value

%identity

Alignment

F4IP13 Protein SHOOT GRAVITROPISM 6

3.7e-43

55.08

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSDAI--------------------------------KCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEEI+LHL GP++A PAMVQILADFASSDA+                                KCW QA W +  D  S S +D DVMSFLNS FELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSDAI--------------------------------KCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWA S D KVR+S+V+ALGQ+VGLITR QLK+ALPRLIP +LEL              LHN+LN SL SESGPPLLDFE    V S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

Arabidopsis top hits

e value

%identity

Alignment

AT2G36810.1 ARM repeat superfamily protein

2.6e-44

55.08

Show/hide

Query:  MMEEIYLHLGGPSSALPAMVQILADFASSDAI--------------------------------KCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL
        MMEEI+LHL GP++A PAMVQILADFASSDA+                                KCW QA W +  D  S S +D DVMSFLNS FELLL
Subjt:  MMEEIYLHLGGPSSALPAMVQILADFASSDAI--------------------------------KCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLL

Query:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS
        RVWA S D KVR+S+V+ALGQ+VGLITR QLK+ALPRLIP +LEL              LHN+LN SL SESGPPLLDFE    V S
Subjt:  RVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPRLIPTMLEL--------------LHNVLNTSLHSESGPPLLDFESAVSVAS

Sequences

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CDS sequence

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ATGGTGATGTGGAAGATGATGGAAGAAATATATCTTCATTTGGGAGGGCCTAGTTCAGCTTTACCAGCTATGGTTCAAATTCTGGCAGATTTTGCTTCTTCTGATGCAAT
TAAATGTTGGTGTCAAGCTGCTTGGCAGCATAGTGTGGACTTCCCTTCACATTCGTCAATTGATGGTGATGTTATGTCATTTCTGAATTCTGCTTTTGAGCTTTTATTGC
GAGTTTGGGCTGCTTCTAGTGATTTAAAGGTTCGTATTTCTTCTGTGGAGGCATTAGGTCAAATTGTGGGTCTTATTACTAGGGCACAACTAAAGGCTGCTTTGCCCAGA
CTTATACCCACCATGTTGGAACTTCTGCATAATGTCCTAAACACTTCTTTACATTCAGAAAGTGGTCCTCCTCTCCTTGACTTTGAGTCAGCGGTCTCGGTCGCCAGTCC
TCAGTCTTGGTGGCCATCGATCGGGGATCGGTGGGTAGCAACCACTTTGATGATTGGGGATTGGGACCAGCAAGCGGGACTAGGGATTGAGGAACGACAATTGGCAATGA
TCACCCATCGACGGCTGTTGCCGAGCACCACCTACCGTTGGCAATCGGTTAATGATCTGGTTGACGTTTCTCAGCCCATTGATGCCACAATAAAGCCTCACCTTCTAAGC
AAAGAACAACTGCTTCTAACTTCTCATTGTCGCTGA

mRNA sequence

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Protein sequence

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MVMWKMMEEIYLHLGGPSSALPAMVQILADFASSDAIKCWCQAAWQHSVDFPSHSSIDGDVMSFLNSAFELLLRVWAASSDLKVRISSVEALGQIVGLITRAQLKAALPR
LIPTMLELLHNVLNTSLHSESGPPLLDFESAVSVASPQSWWPSIGDRWVATTLMIGDWDQQAGLGIEERQLAMITHRRLLPSTTYRWQSVNDLVDVSQPIDATIKPHLLS
KEQLLLTSHCR

Lsi01G012830 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome