; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G013000 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G013000
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionzinc finger protein 593
Genome locationchr01:11288920..11294618
RNA-Seq ExpressionLsi01G013000
SyntenyLsi01G013000
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR013087 - Zinc finger C2H2-type
IPR022755 - Zinc finger, double-stranded RNA binding
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595226.1 Zinc finger protein 593, partial [Cucurbita argyrosperma subsp. sororia]1.3e-5894.12Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD
        MGGKCPHRSVKKRRYSHKTARRTKFL+ GDDMVYD L KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLD
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD

Query:  ADLAAGMGMPDNGPKLMAI
        ADLAAGMGMPDNGPKLMAI
Subjt:  ADLAAGMGMPDNGPKLMAI

XP_004143276.1 zinc finger protein 593 [Cucumis sativus]5.1e-5893.28Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD
        MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVK M GPAPHTQLD
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD

Query:  ADLAAGMGMPDNGPKLMAI
        A+LAAGMGMPDNGPKLMA+
Subjt:  ADLAAGMGMPDNGPKLMAI

XP_008462489.1 PREDICTED: zinc finger protein 593 [Cucumis melo]6.0e-5994.12Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD
        MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLD
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD

Query:  ADLAAGMGMPDNGPKLMAI
        A+LAAGMGMPDNGPKLMA+
Subjt:  ADLAAGMGMPDNGPKLMAI

XP_022143723.1 zinc finger protein 593 [Momordica charantia]1.2e-5994.96Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD
        MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDEL KPDVERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLMTGPAPHTQLD
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD

Query:  ADLAAGMGMPDNGPKLMAI
        A+LAAGMGMPDNGPKLM++
Subjt:  ADLAAGMGMPDNGPKLMAI

XP_022962632.1 zinc finger protein 593 [Cucurbita moschata]3.0e-5893.28Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD
        MGGKCPHRSVKKRRYSHKTARRTKFL+ GDDMVYD L KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLD
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD

Query:  ADLAAGMGMPDNGPKLMAI
        ADLAAGMGMPDNGPKLMA+
Subjt:  ADLAAGMGMPDNGPKLMAI

TrEMBL top hitse value%identityAlignment
A0A0A0KHA1 C2H2-type domain-containing protein2.5e-5893.28Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD
        MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVK M GPAPHTQLD
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD

Query:  ADLAAGMGMPDNGPKLMAI
        A+LAAGMGMPDNGPKLMA+
Subjt:  ADLAAGMGMPDNGPKLMAI

A0A1S3CH13 zinc finger protein 5932.9e-5994.12Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD
        MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLD
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD

Query:  ADLAAGMGMPDNGPKLMAI
        A+LAAGMGMPDNGPKLMA+
Subjt:  ADLAAGMGMPDNGPKLMAI

A0A6J1CRE9 zinc finger protein 5935.9e-6094.96Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD
        MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDEL KPDVERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLMTGPAPHTQLD
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD

Query:  ADLAAGMGMPDNGPKLMAI
        A+LAAGMGMPDNGPKLM++
Subjt:  ADLAAGMGMPDNGPKLMAI

A0A6J1HD68 zinc finger protein 5931.5e-5893.28Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD
        MGGKCPHRSVKKRRYSHKTARRTKFL+ GDDMVYD L KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLD
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD

Query:  ADLAAGMGMPDNGPKLMAI
        ADLAAGMGMPDNGPKLMA+
Subjt:  ADLAAGMGMPDNGPKLMAI

A0A6J1I5Q7 zinc finger protein 5934.2e-5892.44Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD
        MGGKCPHRSVKKRRYSHK+ARRTKFL+ GDDMVYD L KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLD
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLD

Query:  ADLAAGMGMPDNGPKLMAI
        ADLAAGMGMPDNGPKLMA+
Subjt:  ADLAAGMGMPDNGPKLMAI

SwissProt top hitse value%identityAlignment
B0BLT0 Zinc finger protein 5931.8e-1343.4Show/hide
Query:  HRSVKKRRYSH--KTARRTKFLVKGDDMVYDELTKPDVERPL---PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAD
        H+S KK+  S   KT RR K L    D ++ ++ KP+  + L    +D  LPG  Q+YCLHC RYF ++    EHFKTK H++R+K +    P+TQ +A+
Subjt:  HRSVKKRRYSH--KTARRTKFLVKGDDMVYDELTKPDVERPL---PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAD

Query:  LAAGMG
         AAGMG
Subjt:  LAAGMG

Q08004 Bud site selection protein 201.5e-1237.6Show/hide
Query:  RYS---HKTARRTKFLVKGDDMVYDEL-TKPDVERPL--PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMG
        RYS   +KT RRT+ L    D++Y++L TK  V++ L  P+DE  PG+GQ+YC+HC +Y         H K K H++RVK + G  P+TQ  +D AAG  
Subjt:  RYS---HKTARRTKFLVKGDDMVYDEL-TKPDVERPL--PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMG

Query:  MPDNGPKLMAISEMGSPPYAAVEKL
        +     ++  I++   P   + E L
Subjt:  MPDNGPKLMAISEMGSPPYAAVEKL

Q553S1 Zinc finger protein 593 homolog1.4e-1036.44Show/hide
Query:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVER--PLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVK-LMTGPAPHTQ
        MG    H     ++  +K AR TK   K  D ++DE+    +++     VD DLPGMGQ YC+HC ++F        H K K H+ RVK L T P     
Subjt:  MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVER--PLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVK-LMTGPAPHTQ

Query:  LDADLAAGMGMPDNGPKL
            LA      DNG KL
Subjt:  LDADLAAGMGMPDNGPKL

Q9P370 Zinc finger protein bud203.7e-1134.62Show/hide
Query:  VKKRRYSHKTAR----RTKFLVKGDDMVYDELTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAG
        V ++R  H        RT+   +  D ++++LT+ +    LP+D DLPG+GQ+YC+ C RYF +      H K K H++R+K +    P+TQ +A+ A  
Subjt:  VKKRRYSHKTAR----RTKFLVKGDDMVYDELTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAG

Query:  MGMP
        +G P
Subjt:  MGMP

Q9U239 Zinc finger protein 593 homolog8.3e-1138.1Show/hide
Query:  PHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERPL---PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADL
        P    +K   S+KT +R     K  D ++++L KP+    L    +D DLPG GQ+YC+ C+R+F +   R  H KTK H+ RVK +    P+TQ +A+ 
Subjt:  PHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERPL---PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADL

Query:  AAGMG
        A G G
Subjt:  AAGMG

Arabidopsis top hitse value%identityAlignment
AT2G36930.1 zinc finger (C2H2 type) family protein1.2e-4976.72Show/hide
Query:  GKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVE-RPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAD
        G+CP R VKKRR SHKTARR KF VKGDD+VY EL KP+ E +PL +DEDLPGMGQ+YCLHCDRYF+NVSVRD+HFKTK+H+KRV +M G APH+QLDAD
Subjt:  GKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVE-RPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAD

Query:  LAAGMGMPDNGPKLMA
        LA GMGMPDNGPKLM+
Subjt:  LAAGMGMPDNGPKLMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGAAAGTGCCCTCACAGAAGCGTAAAGAAGCGGAGATACTCGCACAAGACCGCTCGGCGAACGAAATTTCTTGTCAAAGGTGATGATATGGTTTACGATGAGTT
AACAAAACCAGATGTGGAGAGACCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTATTACTGCTTGCACTGCGACCGATACTTTGCGAATGTGTCTGTGAGGG
ATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCACACACGCAATTGGACGCCGACCTAGCTGCTGGGATGGGCATGCCTGAT
AACGGTCCAAAGCTTATGGCAATCTCGGAGATGGGTTCGCCGCCGTATGCGGCGGTGGAGAAGCTTGGGATAAATTAG
mRNA sequenceShow/hide mRNA sequence
CCGAACATCACCCTAATAATGAATGAGAGGGAAGAAGATTGAAATTATAAATGACATCATGTAAAATTCAAAAGGTCTAAAAAGGTTTTAGCTTAACAATTATTAAATTA
GGGTTTAAATTGATTTAAATTGATATTTTTACAAATAATAATTAAGAGGAAAAAAAAAGTTGCGCCTAAAATTGAGTAGACTGAGTCAATGCTACGACGTCGTTTTCTGC
CGCTTATATATCTTACTCTCTCTTGTCTCATAAAAAAACTTTCCTTTGGTGGAACAACCACCAAATAAACCCTAAATTTTACTCCGATTCTGCCATAGTCGGGCTCTCAA
GACTCGAAGAGAGAATGGGAGGAAAGTGCCCTCACAGAAGCGTAAAGAAGCGGAGATACTCGCACAAGACCGCTCGGCGAACGAAATTTCTTGTCAAAGGTGATGATATG
GTTTACGATGAGTTAACAAAACCAGATGTGGAGAGACCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTATTACTGCTTGCACTGCGACCGATACTTTGCGAA
TGTGTCTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCACACACGCAATTGGACGCCGACCTAGCTGCTGGGA
TGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATCTCGGAGATGGGTTCGCCGCCGTATGCGGCGGTGGAGAAGCTTGGGATAAATTAG
Protein sequenceShow/hide protein sequence
MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPD
NGPKLMAISEMGSPPYAAVEKLGIN