; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G013140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G013140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA polymerase sigma factor
Genome locationchr01:11411777..11412056
RNA-Seq ExpressionLsi01G013140
SyntenyLsi01G013140
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604407.1 RNA polymerase sigma factor sigF, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.3e-0990.91Show/hide
Query:  MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSGSICSL
        MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSS S  S+
Subjt:  MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSGSICSL

XP_031742499.1 RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus]4.5e-0778.26Show/hide
Query:  MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSGSICSLIF
        MEAGLNLLSSSSPFISRCHPRSFL PSCSS++S SSSS S    +F
Subjt:  MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSGSICSLIF

XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida]2.9e-0692.11Show/hide
Query:  MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSS
        MEAGLNLLSSSS FISRCHPRSFL PSCSSSSSSSS S
Subjt:  MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSS

TrEMBL top hitse value%identityAlignment
A0A0A0KEQ6 RNA polymerase sigma factor2.2e-0778.26Show/hide
Query:  MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSGSICSLIF
        MEAGLNLLSSSSPFISRCHPRSFL PSCSS++S SSSS S    +F
Subjt:  MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSGSICSLIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTGGACTCAATTTGCTCTCTTCTTCATCGCCCTTCATTTCGAGATGCCACCCGAGAAGCTTCCTTCCTCCTTCTTGTTCTTCTTCTTCTTCCTCCTCCTCTTC
TTCAGGTAGTATTTGTAGTTTGATATTTAGTTCATTTCTGTGCTTTGTATGGCTTAAATGTGAAGCTCGTAGTGTTTCCGCTTTAAACATTTCGAGTTGGGTTTGCCTTA
TTTTGATTTTATGCCGCTTGAAATGGCAATTTCTTGTT
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCTGGACTCAATTTGCTCTCTTCTTCATCGCCCTTCATTTCGAGATGCCACCCGAGAAGCTTCCTTCCTCCTTCTTGTTCTTCTTCTTCTTCCTCCTCCTCTTC
TTCAGGTAGTATTTGTAGTTTGATATTTAGTTCATTTCTGTGCTTTGTATGGCTTAAATGTGAAGCTCGTAGTGTTTCCGCTTTAAACATTTCGAGTTGGGTTTGCCTTA
TTTTGATTTTATGCCGCTTGAAATGGCAATTTCTTGTT
Protein sequenceShow/hide protein sequence
MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSGSICSLIFSSFLCFVWLKCEARSVSALNISSWVCLILILCRLKWQFLV