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Lsi01G013270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G013270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L10
Genome locationchr01:11485305..11487030
RNA-Seq ExpressionLsi01G013270
SyntenyLsi01G013270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK38325.1 unknown [Medicago truncatula]9.5e-0766.04Show/hide
Query:  IFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGP
        + ASKR IEA PEPTAV LT A+PS G NSKN  +IPA +KASFA   SP GP
Subjt:  IFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGP

GER43471.1 50S ribosomal protein L10 [Striga asiatica]7.3e-0749.38Show/hide
Query:  ITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSK--NPEVIPACMKASFASRFSPFGPIALEFGRPSR
        +TSAK+AD  + + T++ AS + + A+PEPTAV LTRAKPSLGR  K  +  ++ A  KA    R  P GP A E GRP R
Subjt:  ITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSK--NPEVIPACMKASFASRFSPFGPIALEFGRPSR

KVI09495.1 hypothetical protein Ccrd_012103, partial [Cynara cardunculus var. scolymus]8.9e-0536.27Show/hide
Query:  TLFGSSMGRSTKSSSDTITISSLVYTFHNPITTSFNTSFSRLRKLNNNIR--VSNSNSSNLGNGECLTIKLDTGFPILLHHALDLIKMASFEGLGGHTPI
        TL    +  S+++  +T+TISS  +  H+P+TT  + S  RLR+L+ + R    + +SS+L + + L+ +L    P L +H+L LIKMA    L  HTP+
Subjt:  TLFGSSMGRSTKSSSDTITISSLVYTFHNPITTSFNTSFSRLRKLNNNIR--VSNSNSSNLGNGECLTIKLDTGFPILLHHALDLIKMASFEGLGGHTPI

Query:  EW
        +W
Subjt:  EW

RDX71908.1 hypothetical protein CR513_48679, partial [Mucuna pruriens]2.7e-0942.36Show/hide
Query:  MSFPIEAIARR--------SVNSSLPCITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALE
        MS PIEA A+R         V   LP   +  +A  I   TT         EA P+PTAV  TRA PSLG NSKNPE  PA  KAS A R SP GP AL 
Subjt:  MSFPIEAIARR--------SVNSSLPCITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALE

Query:  FGRP--------------SRTLFGSSMGRSTKSSSDTITISSLV
        F  P              S+ L  S +G STK+  +TI  S+ V
Subjt:  FGRP--------------SRTLFGSSMGRSTKSSSDTITISSLV

RYR00828.1 hypothetical protein Ahy_B07g088933 [Arachis hypogaea]1.4e-1342.55Show/hide
Query:  IFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRP----------------SRTLFGSSMGRSTKSSSDTITIS
        +FASK   EA  +PTAV  TRA PSLG +SKNPE  PA  KASFASR SP GP ALEF RP                 ++L G S+G S K+S +TI  +
Subjt:  IFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRP----------------SRTLFGSSMGRSTKSSSDTITIS

Query:  SLVYTFHNPITTSFNTSFSRLRKLNNNIRVSNSNSSNLGNG
        +     H+P+    +    RL +L+ ++R++  N S+L +G
Subjt:  SLVYTFHNPITTSFNTSFSRLRKLNNNIRVSNSNSSNLGNG

TrEMBL top hitse value%identityAlignment
A0A0A9BAB1 Uncharacterized protein1.8e-1152.94Show/hide
Query:  SVNSSLPCITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRP
        SV S LP +TS   ADK S +  ++FASK  +EA PEPTAV  T A+PSLG NSK P  +PA + AS A    P G  A EF RP
Subjt:  SVNSSLPCITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRP

A0A0E0G9Z1 Uncharacterized protein1.6e-1254.02Show/hide
Query:  RRSVNSSLPCITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRP
        R SV S LP ITS   AD+ S +T ++FASK  +EA+PEPTAV  T A+PSLG NSK P  +PA + AS A    P G  A EF RP
Subjt:  RRSVNSSLPCITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRP

A0A444YFY0 Uncharacterized protein6.7e-1442.55Show/hide
Query:  IFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRP----------------SRTLFGSSMGRSTKSSSDTITIS
        +FASK   EA  +PTAV  TRA PSLG +SKNPE  PA  KASFASR SP GP ALEF RP                 ++L G S+G S K+S +TI  +
Subjt:  IFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRP----------------SRTLFGSSMGRSTKSSSDTITIS

Query:  SLVYTFHNPITTSFNTSFSRLRKLNNNIRVSNSNSSNLGNG
        +     H+P+    +    RL +L+ ++R++  N S+L +G
Subjt:  SLVYTFHNPITTSFNTSFSRLRKLNNNIRVSNSNSSNLGNG

A0A6N2LQD3 Uncharacterized protein8.1e-1255.84Show/hide
Query:  AKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRPSRT
        +K+AD+ S+K      SK  IEA PEPTAV  T A PS G NSKNP +IPA +KAS A+R SP GP A E G P R+
Subjt:  AKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRPSRT

A0A7C9DP55 Uncharacterized protein7.9e-1560.92Show/hide
Query:  RRSVNSSLPCITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRP
        R SVNS LP +TSAK AD  S KT ++  SKR IEA P+PTAV LT+A+PSLG +SK  E I A +KA  A R SPFGP ALE G P
Subjt:  RRSVNSSLPCITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASFASRFSPFGPIALEFGRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACACTCTGAACATGACTAGTCACTGGATTTGCAAGATATTGAAGCTCAGAGCAAAATCATTGACGAGTTCTGAGAATTGGGCAAACATGAGCTTTCCAATTGA
AGCAATAGCAAGACGATCAGTAAATTCAAGCTTGCCTTGCATAACTTCAGCAAAAATGGCTGACAAAATCTCGAACAAAACAACCAAAATATTTGCATCAAAGAGAATAA
TAGAAGCCAATCCAGAACCAACAGCAGTGCTATTGACAAGAGCAAAACCTTCTTTAGGACGCAACTCAAAGAACCCAGAAGTAATACCAGCTTGTATGAAAGCCTCCTTT
GCATCAAGATTTTCTCCATTTGGACCAATAGCTTTAGAGTTCGGTCGACCAAGTCGCACCTTGTTTGGTTCTTCTATGGGACGTAGCACCAAATCCAGTAGTGATACCAT
AACTATCAGTTCCCTTGTTTATACTTTCCATAATCCAATCACTACTAGCTTTAACACCAGCTTTAGTAGACTCCGAAAGCTCAACAATAACATCAGAGTCTCTAATAGCA
ATAGCAGCAACTTGGGAAATGGTGAGTGTCTCACCATCAAGCTTGACACAGGGTTTCCGATACTCCTCCACCATGCGCTTGACCTCATCAAGATGGCTTCCTTTGAGGGA
CTCGGCGGCCATACCCCAATTGAGTGGGTCATGAATGGAGCTCTTGCAAATGGTCTTGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAACACTCTGAACATGACTAGTCACTGGATTTGCAAGATATTGAAGCTCAGAGCAAAATCATTGACGAGTTCTGAGAATTGGGCAAACATGAGCTTTCCAATTGA
AGCAATAGCAAGACGATCAGTAAATTCAAGCTTGCCTTGCATAACTTCAGCAAAAATGGCTGACAAAATCTCGAACAAAACAACCAAAATATTTGCATCAAAGAGAATAA
TAGAAGCCAATCCAGAACCAACAGCAGTGCTATTGACAAGAGCAAAACCTTCTTTAGGACGCAACTCAAAGAACCCAGAAGTAATACCAGCTTGTATGAAAGCCTCCTTT
GCATCAAGATTTTCTCCATTTGGACCAATAGCTTTAGAGTTCGGTCGACCAAGTCGCACCTTGTTTGGTTCTTCTATGGGACGTAGCACCAAATCCAGTAGTGATACCAT
AACTATCAGTTCCCTTGTTTATACTTTCCATAATCCAATCACTACTAGCTTTAACACCAGCTTTAGTAGACTCCGAAAGCTCAACAATAACATCAGAGTCTCTAATAGCA
ATAGCAGCAACTTGGGAAATGGTGAGTGTCTCACCATCAAGCTTGACACAGGGTTTCCGATACTCCTCCACCATGCGCTTGACCTCATCAAGATGGCTTCCTTTGAGGGA
CTCGGCGGCCATACCCCAATTGAGTGGGTCATGAATGGAGCTCTTGCAAATGGTCTTGACTAG
Protein sequenceShow/hide protein sequence
MDNTLNMTSHWICKILKLRAKSLTSSENWANMSFPIEAIARRSVNSSLPCITSAKMADKISNKTTKIFASKRIIEANPEPTAVLLTRAKPSLGRNSKNPEVIPACMKASF
ASRFSPFGPIALEFGRPSRTLFGSSMGRSTKSSSDTITISSLVYTFHNPITTSFNTSFSRLRKLNNNIRVSNSNSSNLGNGECLTIKLDTGFPILLHHALDLIKMASFEG
LGGHTPIEWVMNGALANGLD