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Lsi01G013420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G013420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor bHLH63-like
Genome locationchr01:11610339..11618711
RNA-Seq ExpressionLsi01G013420
SyntenyLsi01G013420
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR024097 - Basic helix-loop-helix leucine zipper transcription factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055413.1 transcription factor bHLH49-like [Cucumis melo var. makuwa]8.0e-3072.82Show/hide
Query:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS
        FLSMKLAAVN       DD +NKE    VFPPSCT ANFPA+G MSSE+T+P SYLQFNPNNQQM SCCGLEMGI+TS VAL+R ISAPV   EN LDSS
Subjt:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS

Query:  CLT
        CLT
Subjt:  CLT

KAG7022281.1 Transcription factor bHLH63, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-2968.14Show/hide
Query:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS
        FLSMKLAAVN       DD + KE    VFPP CTTA F A+G +SSE+T+P SYLQFNPNNQQ+V CCGLE+GI+TSDVAL+R ISAPV   EN LDSS
Subjt:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS

Query:  CLTVSSSPFSFNF
        CLTVS S F FNF
Subjt:  CLTVSSSPFSFNF

XP_008448085.1 PREDICTED: transcription factor bHLH49-like [Cucumis melo]8.0e-3072.82Show/hide
Query:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS
        FLSMKLAAVN       DD +NKE    VFPPSCT ANFPA+G MSSE+T+P SYLQFNPNNQQM SCCGLEMGI+TS VAL+R ISAPV   EN LDSS
Subjt:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS

Query:  CLT
        CLT
Subjt:  CLT

XP_011658545.1 transcription factor bHLH63 [Cucumis sativus]1.4e-2972.82Show/hide
Query:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS
        FLSMKLAAVN       DD +NKE    VFPPSCT ANFP+VG MSSE+T+P SYLQFNPNNQQM SCCGLEMGI+TS VAL+R ISAPV   EN LDSS
Subjt:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS

Query:  CLT
        CLT
Subjt:  CLT

XP_038888827.1 transcription factor bHLH63-like [Benincasa hispida]7.3e-3173.79Show/hide
Query:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS
        FLSMKLAAVN       DD +NKE    VFPPSCTTANFPA+G MSSE+T+P S+LQFNPNNQ MVSCCGLEMGI+TSDVAL+R ISAPV   EN LDSS
Subjt:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS

Query:  CLT
        CLT
Subjt:  CLT

TrEMBL top hitse value%identityAlignment
A0A0A0K0C8 BHLH domain-containing protein6.6e-3072.82Show/hide
Query:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS
        FLSMKLAAVN       DD +NKE    VFPPSCT ANFP+VG MSSE+T+P SYLQFNPNNQQM SCCGLEMGI+TS VAL+R ISAPV   EN LDSS
Subjt:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS

Query:  CLT
        CLT
Subjt:  CLT

A0A1S3BJH6 transcription factor bHLH49-like3.9e-3072.82Show/hide
Query:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS
        FLSMKLAAVN       DD +NKE    VFPPSCT ANFPA+G MSSE+T+P SYLQFNPNNQQM SCCGLEMGI+TS VAL+R ISAPV   EN LDSS
Subjt:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS

Query:  CLT
        CLT
Subjt:  CLT

A0A5D3DFI8 Transcription factor bHLH49-like3.9e-3072.82Show/hide
Query:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS
        FLSMKLAAVN       DD +NKE    VFPPSCT ANFPA+G MSSE+T+P SYLQFNPNNQQM SCCGLEMGI+TS VAL+R ISAPV   EN LDSS
Subjt:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS

Query:  CLT
        CLT
Subjt:  CLT

A0A6J1F684 transcription factor bHLH63-like1.8e-2767.96Show/hide
Query:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS
        FLSMKLAAVN       DD + KE    VFPP CTTA F A+G +SSE+T+P SYLQFNPNNQQ+V CCGLE+GI+TSDVAL+R ISAPV   EN LDSS
Subjt:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS

Query:  CLT
        CLT
Subjt:  CLT

A0A6J1I0A0 transcription factor bHLH63-like5.3e-2767.96Show/hide
Query:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS
        FLSMKLAAVN       DD + KE    VFPP CTTANF A+G +SSE+T+P SY QFN NNQQ+V CCGLEMGI+TSDVAL+R ISAPV   EN LDSS
Subjt:  FLSMKLAAVN-------DDFYNKETNKQVFPPSCTTANFPAVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSS

Query:  CLT
        CLT
Subjt:  CLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTTTTCTATATAGGATGTAGTGATGTGTTTGAATATAATAAAAATGAAACTTATTGTTTAAACCAAAATGATAGTATGGTTTTGTTTGTTTGTTTGTCCAAAGA
TGCAAACTTTTTTAACAAGAACAATAATATGTTAATAGATGTGATATGTGCCAATCACTTATATAAGCATTACGTACTATCGATATATACATTTCATTCTTTGTCAAACT
CTAACTCGATCTTCTTGTCCATGAAGTTAGCTGCTGTCAACGATGATTTCTACAACAAAGAGACAAACAAACAGGTTTTCCCCCCATCTTGCACCACCGCGAATTTCCCG
GCGGTCGGCAGAATGTCATCGGAGGTGACAAATCCTTTTTCCTACTTACAATTCAATCCAAACAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCGATAC
CTCCGATGTCGCTCTTCAAAGAATAATCAGCGCTCCTGTTCCTTGCTCGGAAAATTTGCTCGATTCATCCTGCCTCACCGTAAGTTCTTCACCATTTTCCTTTAATTTCA
GCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTTTTCTATATAGGATGTAGTGATGTGTTTGAATATAATAAAAATGAAACTTATTGTTTAAACCAAAATGATAGTATGGTTTTGTTTGTTTGTTTGTCCAAAGA
TGCAAACTTTTTTAACAAGAACAATAATATGTTAATAGATGTGATATGTGCCAATCACTTATATAAGCATTACGTACTATCGATATATACATTTCATTCTTTGTCAAACT
CTAACTCGATCTTCTTGTCCATGAAGTTAGCTGCTGTCAACGATGATTTCTACAACAAAGAGACAAACAAACAGGTTTTCCCCCCATCTTGCACCACCGCGAATTTCCCG
GCGGTCGGCAGAATGTCATCGGAGGTGACAAATCCTTTTTCCTACTTACAATTCAATCCAAACAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCGATAC
CTCCGATGTCGCTCTTCAAAGAATAATCAGCGCTCCTGTTCCTTGCTCGGAAAATTTGCTCGATTCATCCTGCCTCACCGTAAGTTCTTCACCATTTTCCTTTAATTTCA
GCTAA
Protein sequenceShow/hide protein sequence
MKLFYIGCSDVFEYNKNETYCLNQNDSMVLFVCLSKDANFFNKNNNMLIDVICANHLYKHYVLSIYTFHSLSNSNSIFLSMKLAAVNDDFYNKETNKQVFPPSCTTANFP
AVGRMSSEVTNPFSYLQFNPNNQQMVSCCGLEMGIDTSDVALQRIISAPVPCSENLLDSSCLTVSSSPFSFNFS