CuGenDBv2

Gene ID	Lsi01G013680
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	chr01:11868781..11870004
RNA-Seq Expression	Lsi01G013680
Synteny	Lsi01G013680
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142109.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus]

1.4e-199

92.14

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPST +DSTPS+SKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLKEAEQVLDVLFDDY DYQRPRR KT+ D 
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPL 
Subjt:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
          +AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

7.8e-203

92.63

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPST +DSTPS+SKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DYQRPRRVKT+   
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPLS
Subjt:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        NM+AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

6.6e-202

91.18

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPN+SSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
         S+ QSSPST +D+TPSTSKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DY+RP+RVKTKDDV
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +N+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVEST+K IEPMIEPPA  PTDANPL+
Subjt:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        N++AIQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

1.9e-193

88.48

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFE  PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
         S+ QS+PST +DSTPSTSKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A E+RAKDA LRAFANKLK+AEQVLDVLFDDY DYQ  +RVKT DDV
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLC-STTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPL
        +NESLC STTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY+FA+LDVGLPK+VEST+K IEPMIEPPA  PTDANPL
Subjt:  DNESLC-STTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPL

Query:  SNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        + ++ IQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+
Subjt:  SNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

1.8e-207

93.86

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPSTS+DSTPSTSKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DYQRPRRVK KDD 
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVEST+K IEPMIEPPA  PTDANPLS
Subjt:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        NM++IQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB7 Mediator of RNA polymerase II transcription subunit 4

6.7e-200

92.14

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPST +DSTPS+SKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLKEAEQVLDVLFDDY DYQRPRR KT+ D 
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPL 
Subjt:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
          +AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

3.8e-203

92.63

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPST +DSTPS+SKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DYQRPRRVKT+   
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPLS
Subjt:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        NM+AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

3.8e-203

92.63

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPST +DSTPS+SKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DYQRPRRVKT+   
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPLS
Subjt:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        NM+AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

3.2e-202

91.18

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPN+SSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
         S+ QSSPST +D+TPSTSKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DY+RP+RVKTKDDV
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +N+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVEST+K IEPMIEPPA  PTDANPL+
Subjt:  DNESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        N++AIQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

3.9e-192

87.99

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN  N+SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFE  PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
         S+ QS+PST +DSTPSTSKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A E+RAKDA LRAFANKLK+AEQVLDVLFDDY DYQ  +RVKT DDV
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPL
        +NESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VEST+K IEPMIE PA  PTDANPL
Subjt:  DNESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPL

Query:  SNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        + ++ IQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+
Subjt:  SNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

4.6e-04

30.48

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Query:  STPSTSKEILSLFNVL--QTQLFE-AVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLD-VLFDDYVDYQRPRRVKTKDDVDNESL----
        S  +T   +L L N L    ++++  + +L++   +Q    ++  EI  KD  +   A  LK+ E  L+  L  D V+          D + NE L    
Subjt:  STPSTSKEILSLFNVL--QTQLFE-AVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLD-VLFDDYVDYQRPRRVKTKDDVDNESL----

Query:  -------CSTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP
                   V  ++   D++SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y  A +DV  P
Subjt:  -------CSTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

6.6e-136

64.75

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNI--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPN+              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNI--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVL
        F+ SPNR++WL+AFRGSLP+FL+S     P    + +PS++KEILS FN LQTQLFEAV ELQEIL+LQD+KQKVA EI++KD++L AFANKLK+AE+VL
Subjt:  FEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVL

Query:  DVLFDDYVDYQRPRRVK-TKDDVDNE---SLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA
        D+L DDY DY++P+R K  +DD DN+   S  STTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Subjt:  DVLFDDYVDYQRPRRVK-TKDDVDNE---SLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA

Query:  VESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKP
        VE+ +K +E +IEPP   P +A    ++SAI  LLPPNI VPSGWKPGMPVELPRD+P+PPPGWKPGDPV LPP++S+   R ++ Q +RP+   GLH+P
Subjt:  VESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKP

Query:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
        P+ IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

4.7e-137

64.75

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNI--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPN+              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNI--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVL
        F+ SPNR++WL+AFRGSLP+FL+S     P    + +PS++KEILS FN LQTQLFEAV ELQEIL+LQD+KQKVA EI++KD++L AFANKLK+AE+VL
Subjt:  FEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVL

Query:  DVLFDDYVDYQRPRRVK-TKDDVDNE---SLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA
        D+L DDY DY++P+R K  +DD DN+   S  STTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Subjt:  DVLFDDYVDYQRPRRVK-TKDDVDNE---SLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA

Query:  VESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKP
        VE+ +K +E +IEPP   P +A    ++SAI  LLPPNI VPSGWKPGMPVELPRD+P+PPPGWKPGDPV LPP++S+   R ++ Q +RP+   GLH+P
Subjt:  VESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKP

Query:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
        P+ IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATC
CCACCACCAAAATCAACCCAATATCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCGCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCAT
TAGCTTCCAAGCTCTTTGAAGCTTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTAAAATCCAGTCCTCACCCTCTACC
TCGATTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAACTTCAGGAGATTCTTAATCTTCA
AGACTCTAAGCAGAAGGTTGCTAATGAGATACGTGCTAAAGATGCTAATCTTCGTGCTTTTGCTAATAAGCTCAAGGAAGCTGAGCAGGTTCTTGATGTTTTGTTTGATG
ATTATGTGGATTATCAACGTCCTCGTCGGGTTAAAACGAAGGATGATGTTGACAATGAGTCTTTGTGTTCGACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTG
TCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCG
TGCGTCTCAGTTGTATAATTTTGCAAACCTGGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGACAAAGCTATTGAGCCAATGATTGAGCCTCCAGCTCAGGCGCCAA
CAGATGCTAATCCTCTTTCTAATATGTCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTTCCATCTGGTTGGAAACCTGGAATGCCTGTTGAATTACCTAGAGAT
ATACCAATGCCCCCTCCTGGATGGAAGCCTGGAGACCCCGTGCCATTACCCCCAATGGATTCACTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCT
TCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTG
AAGATGATGATTGA

mRNA sequence

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Protein sequence

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MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPST
SIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDIL
SYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRD
IPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Lsi01G013680 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome