; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G013770 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G013770
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionZinc finger CCHC domain-containing protein 10
Genome locationchr01:11951648..11953254
RNA-Seq ExpressionLsi01G013770
SyntenyLsi01G013770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008447301.1 PREDICTED: uncharacterized protein LOC103489769 [Cucumis melo]4.3e-7783.66Show/hide
Query:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNS--SKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDR
        KLLKLENQIRKET+LRNKAEKRL+LLIKKLESLN ASTSVT   SEISTNS  SKETE QE +SE LVSTIPENQC+K+L+ITTSKQ DEKKPNRN PDR
Subjt:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNS--SKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDR

Query:  VNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIM
        +NS PNSESPNN Y D   +S+IP  KDQSFSVEVKER+HYIDNL  SVPGAAP ANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAI+
Subjt:  VNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIM

Query:  SM
        SM
Subjt:  SM

XP_011653607.1 uncharacterized protein LOC101221538 isoform X1 [Cucumis sativus]1.3e-7684Show/hide
Query:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNSSKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDRVN
        KLLKLENQI+KET+LRNKAEKRLKLLIKKLESLN ASTSVT   SEISTNSS E+  QES+SE LVSTIP+NQC+K+L+ITTSK  DEKKPNRNAP R+N
Subjt:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNSSKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDRVN

Query:  SSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIMSM
        SSPNSESPNNSY D   +S+IP  KDQSFSVEVKEREHYIDNL  SVPGAAP ANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAI+SM
Subjt:  SSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIMSM

XP_031740007.1 uncharacterized protein LOC101221538 isoform X2 [Cucumis sativus]1.3e-7684Show/hide
Query:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNSSKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDRVN
        KLLKLENQI+KET+LRNKAEKRLKLLIKKLESLN ASTSVT   SEISTNSS E+  QES+SE LVSTIP+NQC+K+L+ITTSK  DEKKPNRNAP R+N
Subjt:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNSSKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDRVN

Query:  SSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIMSM
        SSPNSESPNNSY D   +S+IP  KDQSFSVEVKEREHYIDNL  SVPGAAP ANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAI+SM
Subjt:  SSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIMSM

XP_038881375.1 uncharacterized protein LOC120072916 isoform X1 [Benincasa hispida]4.0e-8389.71Show/hide
Query:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT------SEISTNSSKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPD
        KLLKLENQIRKET+LRNKAEKRLKLLIKKLESLNIASTSVT      SEISTNSSKETE QESRSENLVSTIPE QCEKVLDITTSKQRDEKKPNRNAPD
Subjt:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT------SEISTNSSKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPD

Query:  RVNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSV-EVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKA
        R+NSS NSES NNSY D HRSSQIPQRKD+SFSV EVKEREHYIDN+VASVPGAAPAANSET AMKMKEIHERATEVHDALKHIRGNVQSSFE RNHMKA
Subjt:  RVNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSV-EVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKA

Query:  IMSM
        IM +
Subjt:  IMSM

XP_038881376.1 uncharacterized protein LOC120072916 isoform X2 [Benincasa hispida]4.0e-8389.71Show/hide
Query:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT------SEISTNSSKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPD
        KLLKLENQIRKET+LRNKAEKRLKLLIKKLESLNIASTSVT      SEISTNSSKETE QESRSENLVSTIPE QCEKVLDITTSKQRDEKKPNRNAPD
Subjt:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT------SEISTNSSKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPD

Query:  RVNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSV-EVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKA
        R+NSS NSES NNSY D HRSSQIPQRKD+SFSV EVKEREHYIDN+VASVPGAAPAANSET AMKMKEIHERATEVHDALKHIRGNVQSSFE RNHMKA
Subjt:  RVNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSV-EVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKA

Query:  IMSM
        IM +
Subjt:  IMSM

TrEMBL top hitse value%identityAlignment
A0A0A0KXC4 Uncharacterized protein6.1e-7784Show/hide
Query:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNSSKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDRVN
        KLLKLENQI+KET+LRNKAEKRLKLLIKKLESLN ASTSVT   SEISTNSS E+  QES+SE LVSTIP+NQC+K+L+ITTSK  DEKKPNRNAP R+N
Subjt:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNSSKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDRVN

Query:  SSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIMSM
        SSPNSESPNNSY D   +S+IP  KDQSFSVEVKEREHYIDNL  SVPGAAP ANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAI+SM
Subjt:  SSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIMSM

A0A1S3BHR6 uncharacterized protein LOC1034897692.1e-7783.66Show/hide
Query:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNS--SKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDR
        KLLKLENQIRKET+LRNKAEKRL+LLIKKLESLN ASTSVT   SEISTNS  SKETE QE +SE LVSTIPENQC+K+L+ITTSKQ DEKKPNRN PDR
Subjt:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNS--SKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDR

Query:  VNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIM
        +NS PNSESPNN Y D   +S+IP  KDQSFSVEVKER+HYIDNL  SVPGAAP ANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAI+
Subjt:  VNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIM

Query:  SM
        SM
Subjt:  SM

A0A5A7TZE9 Zinc finger CCHC domain-containing protein 102.1e-7783.66Show/hide
Query:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNS--SKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDR
        KLLKLENQIRKET+LRNKAEKRL+LLIKKLESLN ASTSVT   SEISTNS  SKETE QE +SE LVSTIPENQC+K+L+ITTSKQ DEKKPNRN PDR
Subjt:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVT---SEISTNS--SKETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNAPDR

Query:  VNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIM
        +NS PNSESPNN Y D   +S+IP  KDQSFSVEVKER+HYIDNL  SVPGAAP ANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAI+
Subjt:  VNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFERRNHMKAIM

Query:  SM
        SM
Subjt:  SM

A0A6J1CS61 uncharacterized protein LOC111013694 isoform X11.4e-5771.29Show/hide
Query:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSV------TSEISTNSS--KETERQESRSENLVSTIPENQCEK-VLDITTSKQRDEKKPNRN
        K+++LENQIRKET+LRNKAEKRLKLLIKKLESLNIAS SV      +SEISTNSS  KETE QESRSE       ENQ EK V DI   KQRDE K N+N
Subjt:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSV------TSEISTNSS--KETERQESRSENLVSTIPENQCEK-VLDITTSKQRDEKKPNRN

Query:  APDRVNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKER--EHYIDNLVASVPGAAPAANSETGAMKMKE-IHERATEVHDALKHIRGNVQSSFERR
        APD+ NSSPN+ESPNNS TD HR SQI + +DQSFSVE+KER  EHYIDN VASVPGA PAA+ E+ AMK    I ERA +VHD +KH+RGNVQSSFERR
Subjt:  APDRVNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKER--EHYIDNLVASVPGAAPAANSETGAMKMKE-IHERATEVHDALKHIRGNVQSSFERR

Query:  NHMKAIMSM
        NHMKAIMSM
Subjt:  NHMKAIMSM

A0A6J1HGR0 uncharacterized protein LOC1114633361.5e-5167.94Show/hide
Query:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVTS------EISTNSS--KETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNA
        KL++LENQIRKET+ R KAE+RLKLL+KKLESLNIASTSVTS      EISTNSS  KET+ QESRSE+LVSTI +N+ EKV +I       + KPN+ +
Subjt:  KLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVTS------EISTNSS--KETERQESRSENLVSTIPENQCEKVLDITTSKQRDEKKPNRNA

Query:  PDRVNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKER--EHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKH--IRGNVQSSFERR
        PDR NSSPNS+SPNNS TD HRSSQI Q K QSFS E KER  EHYID L ASVPGAAPAA       KMK IHER T+V DA+K   IRGNVQ  FERR
Subjt:  PDRVNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKER--EHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKH--IRGNVQSSFERR

Query:  NHMKAIMSM
        N MKAIMSM
Subjt:  NHMKAIMSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGAGGCAAAGGCTTTGGGTTTTCTGACACTGATTACAGCATCTTTGTTTCTCAACCAACACCGAATCTCCACCCCAATAACGAGACAAATTGCTCTAATGGTAA
ATATGGCAGATTGCTGAAGTTTTCTGCACTGAGAGGCAAAGAAAATGATGGCTACTTGCAAAGAAGACAGACAATGGAGATGGATACAAGTATTGACAGTGAAATGAATT
TGCTTGCAGTGGAAATAAAATGGAAGTTGGAAAGGAGGAAGATTGCTTGCAGAAAGACAAGCTTCAAGATCAGCCAAAGAAGAGGCAAAGCATATGGGGGAAAAGGTAAT
GTATCAATCTCATGGACATTGACATTTTCTTCATCACAATTCACATTCTACACTTCTCTTTGCTTCTACCTTTTTCCAATGTGTAATTTTCTCAAAGGTTTTTCTGTTGT
TGTGAAGTTGTTAAAGTTGGAGAATCAGATTAGAAAGGAGACAGACCTAAGGAACAAAGCTGAGAAGAGGCTTAAACTCTTGATAAAAAAGCTTGAATCCCTCAACATTG
CCTCGACATCAGTAACCTCAGAAATTTCCACAAATTCCTCAAAGGAAACAGAACGCCAAGAATCAAGATCAGAGAATCTCGTTTCAACAATCCCGGAAAATCAATGCGAG
AAAGTTCTCGATATCACCACATCTAAACAGCGAGATGAGAAAAAACCTAATCGGAATGCTCCAGATCGAGTCAATTCGAGCCCTAACTCCGAATCTCCCAACAATTCCTA
CACCGATCTCCACCGATCTTCTCAAATCCCTCAAAGAAAAGATCAAAGTTTTTCAGTAGAAGTAAAGGAGAGAGAGCATTACATAGATAATTTGGTAGCATCAGTCCCCG
GAGCAGCGCCGGCGGCGAATTCAGAGACCGGAGCGATGAAGATGAAGGAAATCCATGAGAGGGCAACAGAAGTTCATGATGCTCTGAAGCACATCAGAGGAAATGTCCAG
AGCTCATTTGAGAGAAGAAATCACATGAAAGCCATAATGAGTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGAGGCAAAGGCTTTGGGTTTTCTGACACTGATTACAGCATCTTTGTTTCTCAACCAACACCGAATCTCCACCCCAATAACGAGACAAATTGCTCTAATGGTAA
ATATGGCAGATTGCTGAAGTTTTCTGCACTGAGAGGCAAAGAAAATGATGGCTACTTGCAAAGAAGACAGACAATGGAGATGGATACAAGTATTGACAGTGAAATGAATT
TGCTTGCAGTGGAAATAAAATGGAAGTTGGAAAGGAGGAAGATTGCTTGCAGAAAGACAAGCTTCAAGATCAGCCAAAGAAGAGGCAAAGCATATGGGGGAAAAGGTAAT
GTATCAATCTCATGGACATTGACATTTTCTTCATCACAATTCACATTCTACACTTCTCTTTGCTTCTACCTTTTTCCAATGTGTAATTTTCTCAAAGGTTTTTCTGTTGT
TGTGAAGTTGTTAAAGTTGGAGAATCAGATTAGAAAGGAGACAGACCTAAGGAACAAAGCTGAGAAGAGGCTTAAACTCTTGATAAAAAAGCTTGAATCCCTCAACATTG
CCTCGACATCAGTAACCTCAGAAATTTCCACAAATTCCTCAAAGGAAACAGAACGCCAAGAATCAAGATCAGAGAATCTCGTTTCAACAATCCCGGAAAATCAATGCGAG
AAAGTTCTCGATATCACCACATCTAAACAGCGAGATGAGAAAAAACCTAATCGGAATGCTCCAGATCGAGTCAATTCGAGCCCTAACTCCGAATCTCCCAACAATTCCTA
CACCGATCTCCACCGATCTTCTCAAATCCCTCAAAGAAAAGATCAAAGTTTTTCAGTAGAAGTAAAGGAGAGAGAGCATTACATAGATAATTTGGTAGCATCAGTCCCCG
GAGCAGCGCCGGCGGCGAATTCAGAGACCGGAGCGATGAAGATGAAGGAAATCCATGAGAGGGCAACAGAAGTTCATGATGCTCTGAAGCACATCAGAGGAAATGTCCAG
AGCTCATTTGAGAGAAGAAATCACATGAAAGCCATAATGAGTATGTAA
Protein sequenceShow/hide protein sequence
MERGKGFGFSDTDYSIFVSQPTPNLHPNNETNCSNGKYGRLLKFSALRGKENDGYLQRRQTMEMDTSIDSEMNLLAVEIKWKLERRKIACRKTSFKISQRRGKAYGGKGN
VSISWTLTFSSSQFTFYTSLCFYLFPMCNFLKGFSVVVKLLKLENQIRKETDLRNKAEKRLKLLIKKLESLNIASTSVTSEISTNSSKETERQESRSENLVSTIPENQCE
KVLDITTSKQRDEKKPNRNAPDRVNSSPNSESPNNSYTDLHRSSQIPQRKDQSFSVEVKEREHYIDNLVASVPGAAPAANSETGAMKMKEIHERATEVHDALKHIRGNVQ
SSFERRNHMKAIMSM