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Lsi01G013800 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G013800
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal protein S24e family protein
Genome locationchr01:11964172..11967088
RNA-Seq ExpressionLsi01G013800
SyntenyLsi01G013800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047320.1 uncharacterized protein E6C27_scaffold908G001380 [Cucumis melo var. makuwa]8.7e-5244.74Show/hide
Query:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGMKLVPTSSPRLDDVLVSCAILGQ----------------
        MSNL LLRKALGSNFISR AT+NH LPLFFRQSP FFSTE EQPPPES  + F + S T GM L PTSS  LDDVL SC I  +                
Subjt:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGMKLVPTSSPRLDDVLVSCAILGQ----------------

Query:  -----------VIVLNE--------------LGFVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKT-----------------
                   V++L E                F  + +MIQFPS+QAY +AF  I +KG LH+LERA RSQW+LL  Y+GKT                 
Subjt:  -----------VIVLNE--------------LGFVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKT-----------------

Query:  -----------------------------------------GILARSRQNGNGTIPFTNTSNACSSFKEQRLLSEQPNYDAGSPITSNSYHLYWTHFFVG
                                                 GIL R+ +NGNG +PFTNTSNAC S KEQRLLSEQPN+ A SPITSNSYH+    FF  
Subjt:  -----------------------------------------GILARSRQNGNGTIPFTNTSNACSSFKEQRLLSEQPNYDAGSPITSNSYHLYWTHFFVG

Query:  SVAG
         ++G
Subjt:  SVAG

KAG6595284.1 hypothetical protein SDJN03_11837, partial [Cucurbita argyrosperma subsp. sororia]4.3e-3558.6Show/hide
Query:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KL--VPTSSPRLD--DVLVSCAI-LGQVIVLNELG
        MS L LLRKAL S+F++ SA ANH LP+FFRQSP FFSTEGEQPP ESPADPFL+TSKT G+   KL  +  ++ + D  ++L  C + L  V V     
Subjt:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KL--VPTSSPRLD--DVLVSCAI-LGQVIVLNELG

Query:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGILARSR
        F    +M+QFPSRQAY NAF VIG+KGRL++LERA RSQWDLL  Y+GKTG    +R
Subjt:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGILARSR

XP_022963065.1 uncharacterized protein LOC111463377 [Cucurbita moschata]6.2e-3458.82Show/hide
Query:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KL--VPTSSPRLD--DVLVSCAI-LGQVIVLNELG
        MS L LLRKAL S+F++ SA ANH LP+FFRQSP FFSTEGEQPP ESPADPFL+TSKT G+   KL  +  ++ + D  ++L  C + L  V V     
Subjt:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KL--VPTSSPRLD--DVLVSCAI-LGQVIVLNELG

Query:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL
        F    +M+QFPSRQAY NAF VIG+KGRL++LERA RSQWD+L  Y GKT +L
Subjt:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL

XP_022972751.1 uncharacterized protein LOC111471264 [Cucurbita maxima]1.4e-3358.17Show/hide
Query:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLV----PTSSPRLDDVLVSCAI-LGQVIVLNELG
        MS L LLRKALGS+F++ SA ANH LP+FFRQSP FFSTEGEQPP E PAD FL+TSKT G+   KL      T    + ++L  C + L  V V     
Subjt:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLV----PTSSPRLDDVLVSCAI-LGQVIVLNELG

Query:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL
        F    +M+QFPSRQAY NAF VIG+KGRL++LERA RSQWD+L  Y+GKT +L
Subjt:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL

XP_023518188.1 uncharacterized protein LOC111781730 [Cucurbita pepo subsp. pepo]8.2e-3458.17Show/hide
Query:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLV----PTSSPRLDDVLVSCAI-LGQVIVLNELG
        MS L LLRKAL S+F++ SA ANH LP+FFRQSP FFSTEGEQPP E PADPFL+TSKT G+   KL      T    + ++L  C + L  V V     
Subjt:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLV----PTSSPRLDDVLVSCAI-LGQVIVLNELG

Query:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL
        F    +M+QFPSRQAY NAF VIG+KGRL++LERA RSQWD+L  Y+GKT +L
Subjt:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL

TrEMBL top hitse value%identityAlignment
A0A0A0L225 Uncharacterized protein3.7e-3257.52Show/hide
Query:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLVPTSSPRL-DDVLV---SCAILGQVIVLNEL-G
        MSNLSLLRKALGSNFISRSATANH LPLFFRQSP FFSTE EQ PPES  + F + + T G+   KLV  S   L  DVL+    C +  + +    +  
Subjt:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLVPTSSPRL-DDVLV---SCAILGQVIVLNEL-G

Query:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL
        FV   +MIQFPS QAY NAF  I +KG L ++ERA RSQW+LL  Y+GKT +L
Subjt:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL

A0A1S3BH58 uncharacterized protein LOC1034897865.3e-3156.86Show/hide
Query:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLVPTSSPRL-DDVLV---SCAI-LGQVIVLNELG
        MSNL LLRKALGSNFISR AT+NH LPLFFRQSP FFSTE EQPPPES  + F + S T G    KL   S   L  DVL+    C + L  +       
Subjt:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLVPTSSPRL-DDVLV---SCAI-LGQVIVLNELG

Query:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL
        F  + +MIQFPS+QAY +AF  I +KG LH+LERA RSQW+LL  Y+GKT  L
Subjt:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL

A0A5A7TVY8 Uncharacterized protein4.2e-5244.74Show/hide
Query:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGMKLVPTSSPRLDDVLVSCAILGQ----------------
        MSNL LLRKALGSNFISR AT+NH LPLFFRQSP FFSTE EQPPPES  + F + S T GM L PTSS  LDDVL SC I  +                
Subjt:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGMKLVPTSSPRLDDVLVSCAILGQ----------------

Query:  -----------VIVLNE--------------LGFVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKT-----------------
                   V++L E                F  + +MIQFPS+QAY +AF  I +KG LH+LERA RSQW+LL  Y+GKT                 
Subjt:  -----------VIVLNE--------------LGFVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKT-----------------

Query:  -----------------------------------------GILARSRQNGNGTIPFTNTSNACSSFKEQRLLSEQPNYDAGSPITSNSYHLYWTHFFVG
                                                 GIL R+ +NGNG +PFTNTSNAC S KEQRLLSEQPN+ A SPITSNSYH+    FF  
Subjt:  -----------------------------------------GILARSRQNGNGTIPFTNTSNACSSFKEQRLLSEQPNYDAGSPITSNSYHLYWTHFFVG

Query:  SVAG
         ++G
Subjt:  SVAG

A0A6J1HGY5 uncharacterized protein LOC1114633773.0e-3458.82Show/hide
Query:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KL--VPTSSPRLD--DVLVSCAI-LGQVIVLNELG
        MS L LLRKAL S+F++ SA ANH LP+FFRQSP FFSTEGEQPP ESPADPFL+TSKT G+   KL  +  ++ + D  ++L  C + L  V V     
Subjt:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KL--VPTSSPRLD--DVLVSCAI-LGQVIVLNELG

Query:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL
        F    +M+QFPSRQAY NAF VIG+KGRL++LERA RSQWD+L  Y GKT +L
Subjt:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL

A0A6J1I6U3 uncharacterized protein LOC1114712646.7e-3458.17Show/hide
Query:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLV----PTSSPRLDDVLVSCAI-LGQVIVLNELG
        MS L LLRKALGS+F++ SA ANH LP+FFRQSP FFSTEGEQPP E PAD FL+TSKT G+   KL      T    + ++L  C + L  V V     
Subjt:  MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLV----PTSSPRLDDVLVSCAI-LGQVIVLNELG

Query:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL
        F    +M+QFPSRQAY NAF VIG+KGRL++LERA RSQWD+L  Y+GKT +L
Subjt:  FVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G02740.1 Ribosomal protein S24e family protein9.7e-0932.45Show/hide
Query:  LSLLRKALGSNFISRS---ATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLVPTSSPRLD----DVLVSCAILGQVIVLNEL--
        +S+ R A+ S+   R      +   LP F ++     ST  EQPPP SP  P    S   G    K    S   L     +VL  C++    +  N    
Subjt:  LSLLRKALGSNFISRS---ATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLVPTSSPRLD----DVLVSCAILGQVIVLNEL--

Query:  -GFVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGK
               + +QFPS  AY  A   I KKG+L++LE+A+R+QWD +  Y GK
Subjt:  -GFVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGK

AT5G02740.2 Ribosomal protein S24e family protein9.7e-0932.45Show/hide
Query:  LSLLRKALGSNFISRS---ATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLVPTSSPRLD----DVLVSCAILGQVIVLNEL--
        +S+ R A+ S+   R      +   LP F ++     ST  EQPPP SP  P    S   G    K    S   L     +VL  C++    +  N    
Subjt:  LSLLRKALGSNFISRS---ATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGM---KLVPTSSPRLD----DVLVSCAILGQVIVLNEL--

Query:  -GFVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGK
               + +QFPS  AY  A   I KKG+L++LE+A+R+QWD +  Y GK
Subjt:  -GFVSLILMIQFPSRQAYHNAFPVIGKKGRLHKLERASRSQWDLLPSYHGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAATCTCAGTCTGCTCCGTAAGGCACTTGGATCCAACTTCATTTCTCGATCGGCGACGGCAAATCATCGCCTCCCTCTGTTTTTCCGCCAATCTCCTAGTTTCTT
CTCCACGGAAGGGGAACAACCCCCACCTGAATCGCCCGCCGATCCTTTTCTCAATACATCAAAAACAACAGGTATGAAGCTCGTTCCTACGTCGTCGCCGCGTCTGGACG
ATGTCCTTGTGTCGTGTGCGATATTGGGACAGGTGATTGTATTAAACGAGTTAGGTTTTGTATCTTTGATTCTGATGATACAGTTCCCCTCCCGGCAGGCTTATCATAAT
GCTTTTCCAGTGATTGGAAAAAAAGGTCGCTTGCACAAATTGGAACGGGCTTCTCGTTCGCAGTGGGACCTTCTTCCATCTTACCATGGAAAAACTGGCATCCTTGCCAG
GTCCCGCCAAAATGGCAACGGTACTATTCCCTTCACCAACACTAGCAATGCATGCAGTTCTTTCAAAGAACAGAGGCTTTTGTCTGAACAACCAAATTACGATGCGGGTT
CTCCAATAACTAGTAACTCTTATCATCTGTATTGGACACATTTTTTTGTTGGCTCAGTGGCTGGGCGTTTTGTAGTAGTCTTTATTGAGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAATCTCAGTCTGCTCCGTAAGGCACTTGGATCCAACTTCATTTCTCGATCGGCGACGGCAAATCATCGCCTCCCTCTGTTTTTCCGCCAATCTCCTAGTTTCTT
CTCCACGGAAGGGGAACAACCCCCACCTGAATCGCCCGCCGATCCTTTTCTCAATACATCAAAAACAACAGGTATGAAGCTCGTTCCTACGTCGTCGCCGCGTCTGGACG
ATGTCCTTGTGTCGTGTGCGATATTGGGACAGGTGATTGTATTAAACGAGTTAGGTTTTGTATCTTTGATTCTGATGATACAGTTCCCCTCCCGGCAGGCTTATCATAAT
GCTTTTCCAGTGATTGGAAAAAAAGGTCGCTTGCACAAATTGGAACGGGCTTCTCGTTCGCAGTGGGACCTTCTTCCATCTTACCATGGAAAAACTGGCATCCTTGCCAG
GTCCCGCCAAAATGGCAACGGTACTATTCCCTTCACCAACACTAGCAATGCATGCAGTTCTTTCAAAGAACAGAGGCTTTTGTCTGAACAACCAAATTACGATGCGGGTT
CTCCAATAACTAGTAACTCTTATCATCTGTATTGGACACATTTTTTTGTTGGCTCAGTGGCTGGGCGTTTTGTAGTAGTCTTTATTGAGTTATGA
Protein sequenceShow/hide protein sequence
MSNLSLLRKALGSNFISRSATANHRLPLFFRQSPSFFSTEGEQPPPESPADPFLNTSKTTGMKLVPTSSPRLDDVLVSCAILGQVIVLNELGFVSLILMIQFPSRQAYHN
AFPVIGKKGRLHKLERASRSQWDLLPSYHGKTGILARSRQNGNGTIPFTNTSNACSSFKEQRLLSEQPNYDAGSPITSNSYHLYWTHFFVGSVAGRFVVVFIEL