CuGenDBv2

Gene ID	Lsi01G014300
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Expansin
Genome location	chr01:12459638..12460757
RNA-Seq Expression	Lsi01G014300
Synteny	Lsi01G014300
Gene Ontology terms	GO:0009664 - plant-type cell wall organization (biological process) GO:0005576 - extracellular region (cellular component) GO:0016020 - membrane (cellular component)
InterPro domains	IPR002963 - Expansin IPR007117 - Expansin, cellulose-binding-like domain IPR007118 - Expansin/Lol pI IPR036749 - Expansin, cellulose-binding-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032657.1 expansin-A4 precursor [Cucumis melo var. makuwa]

4.7e-51

96.12

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN+VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

KAG6595327.1 Expansin-A4, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-50

94.17

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN++LVGQ+LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        F V
Subjt:  FRV

NP_001284471.1 expansin-A4 precursor [Cucumis melo]

4.7e-51

96.12

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN+VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

TYK23537.1 expansin-A4 precursor [Cucumis melo var. makuwa]

4.7e-51

96.12

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN+VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

XP_038880867.1 expansin-A4-like [Benincasa hispida]

7.2e-52

98.06

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

TrEMBL top hits

e value

%identity

Alignment

A0A218XD73 Expansin

1.5e-50

92.23

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVR+S+KGSNT WMSMSRNWGQNWQSN+VLVGQ+LSFRVTGSDRRTSTSWN+AP+NWQFGQTFTGKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

A0A5A7STM7 Expansin

2.3e-51

96.12

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN+VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

A0A5D3DIS7 Expansin

2.3e-51

96.12

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN+VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

C3U028 Expansin

1.5e-50

93.2

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIV+VSVKGSNT WMSMSRNWGQNWQSN+VLVGQ LSFR+TGSDRRTSTSWNVAPSNWQFGQTFTGKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FR+
Subjt:  FRV

Q06BI7 Expansin

2.3e-51

96.12

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNT WMSMSRNWGQNWQSN+VLVGQ LSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

SwissProt top hits

e value

%identity

Alignment

O48818 Expansin-A4

3.1e-50

89.32

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRK+GGIRFTING RYFNLVLITNVAGAGDIVR SVKGS T WMS+SRNWGQNWQSN+VLVGQALSFRVTGSDRRTSTSWN+ PSNWQFGQTF GKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

O80932 Expansin-A3

7.2e-47

82.52

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRK GGIRFT+NGFRYFNLVL+TNVAGAGDI  VSVKGS T+W+ MSRNWGQNWQSN+VL+GQ+LSFRVT SDRR+STSWNVAP+ WQFGQTF+GKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

Q38865 Expansin-A6

1.7e-48

83.5

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRK+GGIRFTINGFRYFNLVL+TNVAGAG+IVR+ VKG++T+WM+MSRNWGQNWQSNSVLVGQ+LSFRVT SDRR+STSWN+AP+NW+FGQTF GKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

Q852A1 Expansin-A7

2.0e-49

87.38

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRK+GG+RFTINGFRYFNLVLITNVAGAGDIVR SVKG++T WM MSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWN AP+ W FGQTF GKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

Q9M2S9 Expansin-A16

5.0e-48

85.44

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +V CRK GGIRFTING RYFNLVLITNVAGAGDI R SVKGS T WMS++RNWGQNWQSN+VLVGQ+LSFRVT SDRRTSTSWN+APSNWQFGQTF GKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

Arabidopsis top hits

e value

%identity

Alignment

AT2G28950.1 expansin A6

1.2e-49

83.5

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRK+GGIRFTINGFRYFNLVL+TNVAGAG+IVR+ VKG++T+WM+MSRNWGQNWQSNSVLVGQ+LSFRVT SDRR+STSWN+AP+NW+FGQTF GKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

AT2G37640.1 Barwin-like endoglucanases superfamily protein

5.1e-48

82.52

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRK GGIRFT+NGFRYFNLVL+TNVAGAGDI  VSVKGS T+W+ MSRNWGQNWQSN+VL+GQ+LSFRVT SDRR+STSWNVAP+ WQFGQTF+GKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

AT2G39700.1 expansin A4

2.2e-51

89.32

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +VPCRK+GGIRFTING RYFNLVLITNVAGAGDIVR SVKGS T WMS+SRNWGQNWQSN+VLVGQALSFRVTGSDRRTSTSWN+ PSNWQFGQTF GKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

AT3G55500.1 expansin A16

3.6e-49

85.44

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        +V CRK GGIRFTING RYFNLVLITNVAGAGDI R SVKGS T WMS++RNWGQNWQSN+VLVGQ+LSFRVT SDRRTSTSWN+APSNWQFGQTF GKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

AT5G02260.1 expansin A9

1.7e-46

77.67

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Query:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN
        ++PCRK+GGIRFTINGF+YFNLVL+TNVAGAGD+++VSVKGSNT W+ +SRNWGQNWQSN++LVGQ+LSFRV  SD R+STS N+APSNWQFGQT++GKN
Subjt:  KVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKN

Query:  FRV
        FRV
Subjt:  FRV

Sequences

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CDS sequence

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mRNA sequence

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ATGAAGGTGCCATGTAGGAAACAAGGCGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTCAACTTGGTACTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAG
GGTTAGCGTCAAAGGATCAAACACCAATTGGATGAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAACTCTGTTTTGGTGGGCCAGGCCCTTTCCTTCCGCGTCA
CCGGCAGTGACCGTCGTACCTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACATTCACGGGAAAGAATTTCCGCGTTTGAAATTCCCTCCCTTTC
TTTTTATCCTTTTTTTGAAAATTTTCCCTCTCTCTTTTTTTCCCCTCTTATTTACCCGGGAAAATTTGGAGTAGTGGGGAGAGGTAAAAGTAAAAGTAGGACGGTCAAAA
TGGTCTTTTTAGGGTTAAAAAGTCACAGCAATTATAAGTGTGTGTAATTCCGAATCATAGCCTCATAGGTGTAGGAAAAGTTACCGAGGTGTGGTAACTTCTTACTTTTT
TACATTGTTTTGTTTTGGGGGTTTCTTTTTTTTCCGTTTGTTTGTTGGGTGTGTGCTTTTATGTTAAGTAGCCGTGGTGAATTTAAAAATTACCGCGGTTGAAAAGAATG
TAGGGGGAGGCTGAAGTGGCTGCAATGGTAAATGTGTAGCCCGCAGCATTTTACTGCTACATACAGTAAAGTTATGTTATATTTATATCCTTATATGAAAGACTCAAATG
TGTTATTATTATTCCAAAGAATTGTACCGTAAAATTGAAAAATGTTCGGAAGGTTATTATTTAA

Protein sequence

Show/hide protein sequence

MKVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTNWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV

Lsi01G014300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome