CuGenDBv2

Gene ID	Lsi01G014370
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Cyclin-dependent protein kinase inhibitor SMR2
Genome location	chr01:12544785..12545009
RNA-Seq Expression	Lsi01G014370
Synteny	Lsi01G014370
Gene Ontology terms	GO:0006620 - posttranslational protein targeting to endoplasmic reticulum membrane (biological process) GO:0030433 - ubiquitin-dependent ERAD pathway (biological process) GO:0032875 - regulation of DNA endoreduplication (biological process) GO:0045839 - negative regulation of mitotic nuclear division (biological process) GO:0005634 - nucleus (cellular component) GO:0016020 - membrane (cellular component) GO:0072380 - TRC complex (cellular component) GO:0005515 - protein binding (molecular function) GO:0060090 - molecular adaptor activity (molecular function)
InterPro domains	IPR040389 - Cyclin-dependent protein kinase inhibitor SMR

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032664.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa]

1.2e-24

82.43

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Query:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA
        MEKT    D N DECLTP+S ACRIP  SKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFS+ PSSR EACA
Subjt:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA

KAF3449173.1 hypothetical protein FNV43_RR09901 [Rhamnella rubrinervis]

8.0e-13

61.76

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Query:  RSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA
        R   + DEC TP+   CRIPV+  CPPPPKKK V G K  PP  GYFQPPDLDALF M P  R +ACA
Subjt:  RSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA

KAG6603646.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-25

82.19

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Query:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEAC
        MEKTD RS TN +ECLTPR+CA RIP  SKCPPPPKKKAVTGRK  PPTSGYF PPDLDALFSM PSSR EAC
Subjt:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEAC

KGN54563.2 hypothetical protein Csa_017876 [Cucumis sativus]

4.2e-22

77.78

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Query:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEA
        MEKT    D N DECLTP+SCACRIP + KCPPPPKKK+ TGRKLAPPT GYFQPPDLD LFSM PSSR EA
Subjt:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEA

XP_012074961.1 cyclin-dependent protein kinase inhibitor SMR4 [Jatropha curcas]

8.0e-13

60.81

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Query:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA
        ME    RS+   +EC TPR   CRIPV S CPPPP+KK+  G+K  PP +GYFQPPDLDAL SM P  R EACA
Subjt:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA

TrEMBL top hits

e value

%identity

Alignment

A0A067KHE1 Uncharacterized protein

3.9e-13

60.81

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Query:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA
        ME    RS+   +EC TPR   CRIPV S CPPPP+KK+  G+K  PP +GYFQPPDLDAL SM P  R EACA
Subjt:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA

A0A0A0KXI9 Uncharacterized protein

1.9e-23

78.08

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Query:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEAC
        MEKT    D N DECLTP+SCACRIP + KCPPPPKKK+ TGRKLAPPT GYFQPPDLD LFSM PSSR EAC
Subjt:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEAC

A0A2P5APV6 Cyclin-dependent kinase inhibitor

7.3e-12

59.38

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Query:  DECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSM--LPSSRCEACA
        ++C TP+   CRIP  S CPPPPKKK+V+G K  PP +GYFQPPDLD+LF+   +PS+R +ACA
Subjt:  DECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSM--LPSSRCEACA

A0A5A7SNA9 Cyclin-dependent protein kinase inhibitor SMR2

5.8e-25

82.43

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Query:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA
        MEKT    D N DECLTP+S ACRIP  SKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFS+ PSSR EACA
Subjt:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA

A0A803QBN7 Uncharacterized protein

2.1e-11

56.34

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Query:  RSDTNS---DECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA
        RSDTN+   ++C TP+   CRIP    CPPPPKKK+++G K  PP +GYF PPDLD+LF ++P SR +ACA
Subjt:  RSDTNS---DECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA

SwissProt top hits

e value

%identity

Alignment

Q1JPP8 Cyclin-dependent protein kinase inhibitor SMR4

1.7e-13

52.7

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Query:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA
        ME  + +++   + C TPRS   RIPV S CPPPP+KK +  RK  PP +GYFQPPDL+ LF   P  R EACA
Subjt:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA

Q9LNX4 Cyclin-dependent protein kinase inhibitor SMR5

4.7e-08

44.93

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Query:  TDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVT---GRKLAPPTSGYFQPPDLDALFSMLPSSR
        T T  D     C TP    CRIP    CPPP ++K      G+K  PP  GYFQPPDLD  FS++ +S+
Subjt:  TDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVT---GRKLAPPTSGYFQPPDLDALFSMLPSSR

Arabidopsis top hits

e value

%identity

Alignment

AT5G02220.1 unknown protein

1.2e-14

52.7

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Query:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA
        ME  + +++   + C TPRS   RIPV S CPPPP+KK +  RK  PP +GYFQPPDL+ LF   P  R EACA
Subjt:  MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA

Sequences

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CDS sequence

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ATGGAGAAGACCGATACGAGATCCGATACGAACAGCGACGAATGTCTAACTCCGAGGAGCTGCGCTTGTAGAATTCCGGTGCTGTCCAAATGTCCGCCACCGCCGAAGAA
GAAAGCGGTCACCGGCCGGAAACTGGCCCCTCCGACGAGCGGTTATTTCCAGCCTCCCGATCTCGATGCTCTGTTTTCCATGCTGCCTTCATCACGATGCGAAGCTTGTG
CTTAG

mRNA sequence

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Protein sequence

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MEKTDTRSDTNSDECLTPRSCACRIPVLSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDALFSMLPSSRCEACA

Lsi01G014370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome