; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G015070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G015070
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsignal recognition particle 19 kDa protein
Genome locationchr01:13132841..13136346
RNA-Seq ExpressionLsi01G015070
SyntenyLsi01G015070
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0004386 - helicase activity (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR002778 - Signal recognition particle, SRP19 subunit
IPR036521 - Signal recognition particle, subunit SRP19-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582147.1 Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]4.0e-6994.96Show/hide
Query:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQ
        E GWNMDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAI SRKQ
Subjt:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQ

Query:  LMLRIADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        LMLRIA+LVPRHPGR KKQEPASSSTAGPSKGKGGRKKK
Subjt:  LMLRIADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

KGN54616.2 hypothetical protein Csa_018066 [Cucumis sativus]3.6e-7097.14Show/hide
Query:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQ
        EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAITSRKQ
Subjt:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQ

Query:  LMLRIADLVPRHPGRTKKQEPA-SSSTAGPSKGKGGRKKK
        LMLRIA+LVPRHPGRTKKQEPA SSSTAGPSKGKGGRKKK
Subjt:  LMLRIADLVPRHPGRTKKQEPA-SSSTAGPSKGKGGRKKK

XP_004147628.1 signal recognition particle 19 kDa protein [Cucumis sativus]8.3e-6797.01Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

XP_008438988.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]1.1e-6696.27Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLR+
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

XP_038879562.1 signal recognition particle 19 kDa protein [Benincasa hispida]1.7e-6797.76Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

TrEMBL top hitse value%identityAlignment
A0A0A0L5F9 Uncharacterized protein1.5e-6996.4Show/hide
Query:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQ
        EFG NMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQ
Subjt:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQ

Query:  LMLRIADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        LMLRIA+LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
Subjt:  LMLRIADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

A0A1S3AYC2 signal recognition particle 19 kDa protein5.2e-6796.27Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLR+
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

A0A6J1CAM2 signal recognition particle 19 kDa protein4.4e-6695.56Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAITSRKQ+MLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSK-GKGGRKKK
        A+LVPRHPGRTKKQEPASSSTAGPSK GKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSK-GKGGRKKK

A0A6J1GUF8 signal recognition particle 19 kDa protein2.6e-6695.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAI SRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGR KKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

A0A6J1IY39 signal recognition particle 19 kDa protein2.0e-6696.27Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAI SRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGR KKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

SwissProt top hitse value%identityAlignment
P09132 Signal recognition particle 19 kDa protein1.7e-2248.85Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG L      SRK +ML  A+++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP

Query:  RHPGRTKKQEPASSST---AGPSKGKGGRKK
        +   RT+K   A  S     G  KGKG +KK
Subjt:  RHPGRTKKQEPASSST---AGPSKGKGGRKK

P49964 Signal recognition particle 19 kDa protein4.3e-5073.44Show/hide
Query:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVPR
        +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTCVEI DCCSHLK+P AIE+DKAYPRDF Q GRVRV LKK+DG   NPAI ++KQLM++IA+LVP+
Subjt:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVPR

Query:  HPGRTKKQEPASSSTAGPSKGKGGRKKK
        H GRTKKQEPA+SSTAG SKGKGG+KKK
Subjt:  HPGRTKKQEPASSSTAGPSKGKGGRKKK

Q5RBR1 Signal recognition particle 19 kDa protein1.7e-2248.85Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG L      SRK +ML  A+++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP

Query:  RHPGRTKKQEPASSST---AGPSKGKGGRKK
        +   RT+K   A  S     G  KGKG +KK
Subjt:  RHPGRTKKQEPASSST---AGPSKGKGGRKK

Q943Z6 Signal recognition particle 19 kDa protein4.7e-4968.28Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C+EI DCC HLKLP A+EIDKAYPRDFMQ GRVRV LK+EDG L NPAITSRK LM +I
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQE---------PASSSTAGPS--KGKGGRKKK
        A+LVPRHP R KKQE          A++ST+G S   GKGG+KK+
Subjt:  ADLVPRHPGRTKKQE---------PASSSTAGPS--KGKGGRKKK

Q9D7A6 Signal recognition particle 19 kDa protein7.6e-2348.09Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG L      SRK +ML +A+++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP

Query:  RHPGRTKKQ---EPASSSTAGPSKGKGGRKK
        +   RT+K    +P      G  KGKG +KK
Subjt:  RHPGRTKKQ---EPASSSTAGPSKGKGGRKK

Arabidopsis top hitse value%identityAlignment
AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative3.4e-5068.28Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C+EI DCC HLKLP A+EIDKAYPRDFMQ GRVRV LK+EDG L NPAITSRK LM +I
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQE---------PASSSTAGPS--KGKGGRKKK
        A+LVPRHP R KKQE          A++ST+G S   GKGG+KK+
Subjt:  ADLVPRHPGRTKKQE---------PASSSTAGPS--KGKGGRKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCAAGAATTTGGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGCAG
ACGTATAGGTGTTAGCAAAGCATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGTTGCAGTCATCTCAAACTGCCTTTTGCTATTGAGATTGATAAAGCTTATCCTC
GCGATTTCATGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAATGCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAT
CTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGCAAGAATTTGGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGCAG
ACGTATAGGTGTTAGCAAAGCATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGTTGCAGTCATCTCAAACTGCCTTTTGCTATTGAGATTGATAAAGCTTATCCTC
GCGATTTCATGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAATGCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAT
CTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGTTGCATTATGC
AATTGCAAGAACCAAATTGTTATCGACCAGGTCTGGAGATTGAAAAATGTGGAAATTTCTCAATAATTTGTCGCCAGGGTTGTTTGCTTCAGAACTTTGGAAATCAAAGG
TTTTGAGAAGGTCAGGTTTTTCATCATTCATTAGGTGGTGCTGTTCCTGGTGCACAGAGGCATTCTGTTCTCAATTTGAATTTCTCGTGGGTTATTTTACTCCCAAGTCT
TTTGAGTTTATATTTTCATGACTACAGTTGAGAGTTAGGGCTTGACAATCTAACTTTAAAATGTCATTGAATTACTTCCCGAGTTAAAATATCATTTTAGTTCTTGTATC
TTGTATTTTTAAATATTTAAATTTAGTTT
Protein sequenceShow/hide protein sequence
MWQEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIAD
LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK