CuGenDBv2

Gene ID	Lsi01G015460
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	LIMR family protein At5g01460
Genome location	chr01:13631188..13631716
RNA-Seq Expression	Lsi01G015460
Synteny	Lsi01G015460
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

BBH06269.1 LMBR1-like membrane protein [Prunus dulcis]

4.6e-23

72.94

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALA----VFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFCSTAFAYYA+ATAAQEIFGHTLQSLRGI+YLYKYNVFQIAFI LA    V+ +  +    + +  GWRRKKPSGRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALA----VFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

XP_008449896.1 PREDICTED: LIMR family protein At5g01460 [Cucumis melo]

2.1e-23

80.25

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALA  G   +  +      GWRRKKPSGRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

XP_022151537.1 LIMR family protein At5g01460 [Momordica charantia]

4.6e-23

79.01

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFCSTAFAYYARATAAQEIFGHTLQSLRGI+YLYKYNVFQIAFIALA  G   +  +      GWRRKKPSGRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

XP_038883505.1 LIMR family protein At3g08930 [Benincasa hispida]

2.1e-23

80.25

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALA  G   +  +      GWRRKKPSGRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

XP_039007619.1 LIMR family protein At5g01460-like isoform X1 [Hibiscus syriacus]

2.1e-23

74.07

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFCSTAF YYA+ATAAQEIFGHTL+SLRGIKYLYKYNVFQIAF+ LA      +     V+F+GWRRKKPSG+FQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BN26 LIMR family protein At5g01460

1.0e-23

80.25

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALA  G   +  +      GWRRKKPSGRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

A0A4Y1RPW3 LMBR1-like membrane protein

2.3e-23

72.94

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALA----VFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFCSTAFAYYA+ATAAQEIFGHTLQSLRGI+YLYKYNVFQIAFI LA    V+ +  +    + +  GWRRKKPSGRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALA----VFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

A0A5D3DUI7 LIMR family protein

1.0e-23

80.25

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALA  G   +  +      GWRRKKPSGRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

A0A6J1DDS6 LIMR family protein At5g01460

2.3e-23

79.01

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFCSTAFAYYARATAAQEIFGHTLQSLRGI+YLYKYNVFQIAFIALA  G   +  +      GWRRKKPSGRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

A0A6J1HSM3 LIMR family protein At5g01460-like

2.9e-23

77.78

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAF+ALA  G   +  +      GWRRKKP+GRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

SwissProt top hits

e value

%identity

Alignment

Q658I5 LIMR family protein Os06g0128200

2.8e-23

67.9

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFC+TAFAYYA+ATAAQEIFGHTLQSLRGIKYLYKYNVFQ  F+ALA+      ++       GWR++KP+GRFQLS+
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

Q9M028 LIMR family protein At5g01460

9.7e-24

71.6

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFC+TAF YYA+ATAAQEIFGHTLQSLRGIKYLYKYNVFQI F+ LA      +     + F GWRRKKPSGRFQLS+
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

Q9SR93 LIMR family protein At3g08930

4.8e-23

71.6

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFC+TAF YYA+ATAAQEIFGHTLQSLRGIKYLYKYNVFQI F+ LA      +     + F GWRRKK SGRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

Arabidopsis top hits

e value

%identity

Alignment

AT3G08930.1 LMBR1-like membrane protein

3.4e-24

71.6

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFC+TAF YYA+ATAAQEIFGHTLQSLRGIKYLYKYNVFQI F+ LA      +     + F GWRRKK SGRFQLSS
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

AT5G01460.1 LMBR1-like membrane protein

6.9e-25

71.6

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Query:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS
        +VIQFC+TAF YYA+ATAAQEIFGHTLQSLRGIKYLYKYNVFQI F+ LA      +     + F GWRRKKPSGRFQLS+
Subjt:  TVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

Sequences

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CDS sequence

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ATGTTCAGCAGTTGTTATTTAGTTGCCACTGTGATTCAGTTTTGCTCCACGGCATTTGCATACTATGCAAGAGCAACTGCAGCACAAGAAATCTTTGGACACACATTGCA
GTCTCTTCGCGGAATCAAATATTTGTACAAGTATAATGTGTTTCAAATAGCATTCATTGCGTTGGCGGTTTTTGGTTCTAATGCCATGGTATCCTCTTGTCTTGTAAACT
TCAAGGGATGGAGAAGAAAGAAGCCTTCTGGCAGGTTCCAGCTTTCCTCGTAA

mRNA sequence

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Protein sequence

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MFSSCYLVATVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAVFGSNAMVSSCLVNFKGWRRKKPSGRFQLSS

Lsi01G015460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome