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Lsi01G015490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G015490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsymplekin isoform X2
Genome locationchr01:13665873..13667663
RNA-Seq ExpressionLsi01G015490
SyntenyLsi01G015490
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059082.1 symplekin isoform X1 [Cucumis melo var. makuwa]5.3e-3186.17Show/hide
Query:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
        T   S +    LPPAQLENALNKTAALKAPLVAHASQPNI+STLPRAVLTVLGITLDAQN+SQVQSSQ NMVDS NSEKEVAVPEKSKESSVAG
Subjt:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
TYK29249.1 symplekin isoform X2 [Cucumis melo var. makuwa]5.3e-3186.17Show/hide
Query:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
        T   S +    LPPAQLENALNKTAALKAPLVAHASQPNI+STLPRAVLTVLGITLDAQN+SQVQSSQ NMVDS NSEKEVAVPEKSKESSVAG
Subjt:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
XP_011653694.1 symplekin isoform X1 [Cucumis sativus]1.8e-3187.23Show/hide
Query:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
        T   S +    LPP QLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQ NMVDS NSEKEVAVPEKSKESSVAG
Subjt:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
XP_011653695.1 symplekin isoform X2 [Cucumis sativus]1.8e-3187.23Show/hide
Query:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
        T   S +    LPP QLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQ NMVDS NSEKEVAVPEKSKESSVAG
Subjt:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
XP_011653696.1 symplekin isoform X3 [Cucumis sativus]1.8e-3187.23Show/hide
Query:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
        T   S +    LPP QLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQ NMVDS NSEKEVAVPEKSKESSVAG
Subjt:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
TrEMBL top hitse value%identityAlignment
A0A0A0KXZ6 Uncharacterized protein8.8e-3287.23Show/hide
Query:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
        T   S +    LPP QLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQ NMVDS NSEKEVAVPEKSKESSVAG
Subjt:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
A0A1S3CLD7 symplekin isoform X12.6e-3186.17Show/hide
Query:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
        T   S +    LPPAQLENALNKTAALKAPLVAHASQPNI+STLPRAVLTVLGITLDAQN+SQVQSSQ NMVDS NSEKEVAVPEKSKESSVAG
Subjt:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
A0A1S3CMF6 symplekin isoform X22.6e-3186.17Show/hide
Query:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
        T   S +    LPPAQLENALNKTAALKAPLVAHASQPNI+STLPRAVLTVLGITLDAQN+SQVQSSQ NMVDS NSEKEVAVPEKSKESSVAG
Subjt:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
A0A5A7UT57 Symplekin isoform X12.6e-3186.17Show/hide
Query:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
        T   S +    LPPAQLENALNKTAALKAPLVAHASQPNI+STLPRAVLTVLGITLDAQN+SQVQSSQ NMVDS NSEKEVAVPEKSKESSVAG
Subjt:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
A0A5D3E0M8 Symplekin isoform X22.6e-3186.17Show/hide
Query:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
        T   S +    LPPAQLENALNKTAALKAPLVAHASQPNI+STLPRAVLTVLGITLDAQN+SQVQSSQ NMVDS NSEKEVAVPEKSKESSVAG
Subjt:  TSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQANMVDSGNSEKEVAVPEKSKESSVAG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27595.1 CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075)8.2e-0640Show/hide
Query:  RTSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQA
        +T  HS      LP  QLE+ + K   L+  L A+A+QP IRS+LP + L+VLG+     + SQ+  S A
Subjt:  RTSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQA
AT5G01400.1 HEAT repeat-containing protein8.5e-1146.91Show/hide
Query:  LPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQ--NTSQVQSSQANMVDSGNSEKEVAVPEKSKES
        LPP QL NAL K  AL+APL AHASQP I+S+LPR+ L VLG+  D+Q   TSQVQ+++         +++ + P+++ +S
Subjt:  LPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQ--NTSQVQSSQANMVDSGNSEKEVAVPEKSKES

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCTTTGCTTAGACAAGTGCACAGCCTGCCTGTCTTCTCCTTCCTCAGATTCTTCGTTAATGCTCAGTCGTTAACTAAGTTAAATCCTTTTAGATTAGGTAGAAA
CCCTGGACGCACTTCTGACCATTCTCTATCTTGCTGGAAACTGCTACCACCAGCACAGCTCGAAAATGCATTAAACAAAACTGCAGCACTCAAGGCACCTTTGGTTGCTC
ATGCTAGCCAACCAAATATCCGATCGACACTCCCAAGGGCTGTGTTGACTGTTCTAGGGATTACCTTAGATGCTCAAAATACAAGCCAGGTGCAATCAAGTCAGGCTAAC
ATGGTCGATTCAGGTAACTCGGAGAAGGAGGTTGCAGTCCCAGAAAAATCTAAAGAATCCTCGGTTGCCGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCTTTGCTTAGACAAGTGCACAGCCTGCCTGTCTTCTCCTTCCTCAGATTCTTCGTTAATGCTCAGTCGTTAACTAAGTTAAATCCTTTTAGATTAGGTAGAAA
CCCTGGACGCACTTCTGACCATTCTCTATCTTGCTGGAAACTGCTACCACCAGCACAGCTCGAAAATGCATTAAACAAAACTGCAGCACTCAAGGCACCTTTGGTTGCTC
ATGCTAGCCAACCAAATATCCGATCGACACTCCCAAGGGCTGTGTTGACTGTTCTAGGGATTACCTTAGATGCTCAAAATACAAGCCAGGTGCAATCAAGTCAGGCTAAC
ATGGTCGATTCAGGTAACTCGGAGAAGGAGGTTGCAGTCCCAGAAAAATCTAAAGAATCCTCGGTTGCCGGTTGACAGATTGGGATCAATTATTTTCAGTCGTATCCTTC
ACCGAGTTCCAAGTGCGTCGAGCCCACAGAGTTTTCCTTGATAAAGAAACTGGGCAAATTCCTCTCACAGACAAGATTTTCTCCCAACAAGCTTTTCTTCTAAAGTCAGA
AGGCTAACGCTTGCACTTTTCAGCTGAGAAAGGTAAACATCATTCCAATGAATTTGCTTAGTTTAAAGTTACAAAAATCATATCAAGAATCTAGAAAAGCTGTGCTTTAG
GTAGAGAGTGGTCATCTTATGATATGTGGGGGAAGAGCATGGCTCTAAGAATGTAATAGCAATAATAGAGAGTTGTATGCTAATTTTTGTTGCAAGGAATTTATGATGAC
AATTTGATGAGTTTACAATTTAGACAAGTAGAGTATTTGAAAAATCTTAACTTCAAAAAAGAACATTTAAAATGAAGTGTGTATTTGACAAGACTTTTGGAATTAAGAAA
TAATGATAATAGAAGTTTGATAGTCTTCGTTA
Protein sequenceShow/hide protein sequence
MAPLLRQVHSLPVFSFLRFFVNAQSLTKLNPFRLGRNPGRTSDHSLSCWKLLPPAQLENALNKTAALKAPLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQAN
MVDSGNSEKEVAVPEKSKESSVAG