CuGenDBv2

Gene ID	Lsi01G016200
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	High mobility group B protein 6
Genome location	chr01:14593464..14594563
RNA-Seq Expression	Lsi01G016200
Synteny	Lsi01G016200
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025412.1 high mobility group B protein 6 [Cucumis melo var. makuwa]

7.3e-85

89.34

Show/hide

Query:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE
        MQTLHHPL +P+D+PLKSGRRPLQ KNSLPNPVPSVAKIIKSKPE IQISLSGDANKEN PP      ATT SIESCD SLADEL+AVKRK+ERLRL+GE
Subjt:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEF+IGDGEESVGENSSLDS+EFVTGF
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF

XP_004142680.1 high mobility group B protein 6 [Cucumis sativus]

2.8e-84

89.34

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Query:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE
        MQTLHHPL  P+DLPLKSGRRPLQ KNSLPNPVPSVAKIIKSKPE IQISLSGDANKEN PP       TT SIESCD SLADEL+AVKRK+ERLRL+GE
Subjt:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEF+IGDGEESVGENSSLDS+EFVTGF
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF

XP_008463266.1 PREDICTED: high mobility group B protein 6 [Cucumis melo]

1.0e-83

88.83

Show/hide

Query:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE
        MQTLHHPL +P+D+PLKSGRRPLQ KNSLPN VPSVAKIIKSKPE IQISLSGDANKEN PP      ATT SIESCD SLADEL+AVKRK+ERLRL+GE
Subjt:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEF+IGDGEESVGENSSLDS+EFVTGF
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF

XP_022978293.1 high mobility group B protein 13-like [Cucurbita maxima]

4.4e-82

86.29

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Query:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE
        MQ LH PLATP DLPLKSGRRPLQ KNSLPNPVP+VAK+IKSKPERIQISL  DANKEN PPIHA A    AS+ESCD SLADEL+AVKRKLERLRLE E
Subjt:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF
        RTEQML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE++IGDGEESVGENSSLDS+EFVTGF
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF

XP_038883293.1 uncharacterized protein LOC120074285 [Benincasa hispida]

1.4e-91

94.92

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Query:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE
        MQTLHHPLATPQDLPLKSGRRPLQ KNSLPN  PSVAK IKSKPERIQISLSGDANKEN PPIHATAT TTASIESCDSSLADEL+AVKRKLERLRL+GE
Subjt:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF
        RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEF+IGDGEESVGENSSLDSA FVTGF
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L063 Uncharacterized protein

1.3e-84

89.34

Show/hide

Query:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE
        MQTLHHPL  P+DLPLKSGRRPLQ KNSLPNPVPSVAKIIKSKPE IQISLSGDANKEN PP       TT SIESCD SLADEL+AVKRK+ERLRL+GE
Subjt:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEF+IGDGEESVGENSSLDS+EFVTGF
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF

A0A1S3CJ78 high mobility group B protein 6

5.1e-84

88.83

Show/hide

Query:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE
        MQTLHHPL +P+D+PLKSGRRPLQ KNSLPN VPSVAKIIKSKPE IQISLSGDANKEN PP      ATT SIESCD SLADEL+AVKRK+ERLRL+GE
Subjt:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEF+IGDGEESVGENSSLDS+EFVTGF
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF

A0A5A7SJQ2 High mobility group B protein 6

3.5e-85

89.34

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Query:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE
        MQTLHHPL +P+D+PLKSGRRPLQ KNSLPNPVPSVAKIIKSKPE IQISLSGDANKEN PP      ATT SIESCD SLADEL+AVKRK+ERLRL+GE
Subjt:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEF+IGDGEESVGENSSLDS+EFVTGF
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF

A0A5D3CEI7 High mobility group B protein 6

5.1e-84

88.83

Show/hide

Query:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE
        MQTLHHPL +P+D+PLKSGRRPLQ KNSLPN VPSVAKIIKSKPE IQISLSGDANKEN PP      ATT SIESCD SLADEL+AVKRK+ERLRL+GE
Subjt:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEF+IGDGEESVGENSSLDS+EFVTGF
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF

A0A6J1ISM0 high mobility group B protein 13-like

2.1e-82

86.29

Show/hide

Query:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE
        MQ LH PLATP DLPLKSGRRPLQ KNSLPNPVP+VAK+IKSKPERIQISL  DANKEN PPIHA A    AS+ESCD SLADEL+AVKRKLERLRLE E
Subjt:  MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGE

Query:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF
        RTEQML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE++IGDGEESVGENSSLDS+EFVTGF
Subjt:  RTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G01910.1 unknown protein

4.6e-21

43.43

Show/hide

Query:  SGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIE-SCDSSLADELSAVKRKLERLRLEGERTEQMLRERDLVLELR
        SGR+ LQ +N    P    A  +K K        + +  KENL            ++E S D+SLA+ELSA K+KLERLR + E TE++L+ERD  ++L 
Subjt:  SGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIE-SCDSSLADELSAVKRKLERLRLEGERTEQMLRERDLVLELR

Query:  MKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSA
        M  LLQR + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++      F       GEE   E SS++ A
Subjt:  MKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSA

AT5G01910.2 unknown protein

5.1e-20

46.26

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Query:  SGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIE-SCDSSLADELSAVKRKLERLRLEGERTEQMLRERDLVLELR
        SGR+ LQ +N    P    A  +K K        + +  KENL            ++E S D+SLA+ELSA K+KLERLR + E TE++L+ERD  ++L 
Subjt:  SGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIE-SCDSSLADELSAVKRKLERLRLEGERTEQMLRERDLVLELR

Query:  MKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK
        M  LLQR + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++
Subjt:  MKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGACTCTCCACCATCCCTTAGCCACTCCTCAAGATCTTCCTCTGAAGTCCGGCCGCCGCCCACTCCAGCAGAAGAATTCTCTCCCAAATCCTGTTCCTTCCGTCGC
CAAAATCATCAAATCTAAGCCGGAACGGATCCAGATCTCTCTCTCCGGCGACGCCAACAAGGAGAACCTTCCGCCGATTCACGCGACGGCAACTGCAACAACGGCGAGTA
TTGAGTCCTGTGATTCGTCTCTGGCGGATGAACTTAGTGCGGTTAAGAGGAAGCTCGAGAGATTGAGATTGGAAGGTGAACGAACGGAGCAGATGTTGAGAGAAAGGGAT
TTGGTGTTGGAGTTACGGATGAAGGAGCTGTTGCAGAGAAGTCAGGAGCAGAGAGATCTGGAGATGGAAGTCGATAGGTTATTCAGATTAAAGGAACTCAGATCGTACTG
TATGAGGATTTCTCCGATTCGGAGTCTCAGAGAGAAAGAGCGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGATATCGGCGATGGAGAAGAATCTGTGGGCG
AAAACTCCTCGTTGGATTCTGCAGAATTCGTAACAGGTTTTGAAATCGTTTAA

mRNA sequence

Show/hide mRNA sequence

CAAAAATCCAAATCCTTCTGAAAACCCCTTTTTTTTCCTCTCCCATTCTTCTCTTTTTCTATGATTCCATTTCTTCTCTTTCAAATCAATTCTCCATTTCCATCAATATG
CAGACTCTCCACCATCCCTTAGCCACTCCTCAAGATCTTCCTCTGAAGTCCGGCCGCCGCCCACTCCAGCAGAAGAATTCTCTCCCAAATCCTGTTCCTTCCGTCGCCAA
AATCATCAAATCTAAGCCGGAACGGATCCAGATCTCTCTCTCCGGCGACGCCAACAAGGAGAACCTTCCGCCGATTCACGCGACGGCAACTGCAACAACGGCGAGTATTG
AGTCCTGTGATTCGTCTCTGGCGGATGAACTTAGTGCGGTTAAGAGGAAGCTCGAGAGATTGAGATTGGAAGGTGAACGAACGGAGCAGATGTTGAGAGAAAGGGATTTG
GTGTTGGAGTTACGGATGAAGGAGCTGTTGCAGAGAAGTCAGGAGCAGAGAGATCTGGAGATGGAAGTCGATAGGTTATTCAGATTAAAGGAACTCAGATCGTACTGTAT
GAGGATTTCTCCGATTCGGAGTCTCAGAGAGAAAGAGCGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGATATCGGCGATGGAGAAGAATCTGTGGGCGAAA
ACTCCTCGTTGGATTCTGCAGAATTCGTAACAGGTTTTGAAATCGTTTAAGTTTCGTTTTGCCCTAATTTTCCAGTCACTACTGCTACCTCTTCTTCCTTCATCTTCTTT
GGATTTCAAATGTAGAAAAAGAAATCAATGTAATACCTCATTATGATCTTCTTTATGCTTTAATTGAAACTTTCGAGTTGTAATCAATATCATTCTCCATCTTCTTCACT
TCAATTAATGCTTGAAAATGAAGAAAATCAAAATCGTTCATGA

Protein sequence

Show/hide protein sequence

MQTLHHPLATPQDLPLKSGRRPLQQKNSLPNPVPSVAKIIKSKPERIQISLSGDANKENLPPIHATATATTASIESCDSSLADELSAVKRKLERLRLEGERTEQMLRERD
LVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFDIGDGEESVGENSSLDSAEFVTGFEIV

Lsi01G016200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome