; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G016600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G016600
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionB3 domain-containing protein
Genome locationchr01:15164934..15165791
RNA-Seq ExpressionLsi01G016600
SyntenyLsi01G016600
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KCW54865.1 hypothetical protein EUGRSUZ_I00811 [Eucalyptus grandis]3.5e-0831.88Show/hide
Query:  PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTG
        PS+ P ++   I +       +++EK L   D++R + RL +  K++++ FL+EEE++ L   + ++V+++EP  E    LRLKK     K+  SY LT 
Subjt:  PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTG

Query:  GWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV
         W      ++ + LM+   +++W FRV+G+LWF +  V
Subjt:  GWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV

KCW54891.1 hypothetical protein EUGRSUZ_I00861 [Eucalyptus grandis]4.2e-0932.39Show/hide
Query:  FQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASY
        F   P + P R+ + I++       +++EK L   D++R + RL +  K+I++ FL+EEE++ L   + ++V+++EP  E VS L+LK+   + K + SY
Subjt:  FQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASY

Query:  ALTGGWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV
         LT  W      +  + LM+   +++W FRV+G+LWF ++ V
Subjt:  ALTGGWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV

XP_022156187.1 VID27-like protein [Momordica charantia]6.4e-3438.18Show/hide
Query:  GETTGD---DNAPSSYNESEN-SEMIEAEEEGDIINVIDEETAAERGRGKKSAAEKMKIVNTETDQEATRSKEIEIGKQKIVYTNESTKS-------ASS
        GETT D   D+ P +Y+ +E+ +  +  EE  +  +  +EE     G G     E  ++     DQE T    +EI ++K V   E+T+S       AS+
Subjt:  GETTGD---DNAPSSYNESEN-SEMIEAEEEGDIINVIDEETAAERGRGKKSAAEKMKIVNTETDQEATRSKEIEIGKQKIVYTNESTKS-------ASS

Query:  SAVIVEERESSESSIDE-KTETKTFQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVME
        +A    +++SSES  +E +TE++   NFP  FP  F K + DP SI PRILMEK LR  DV+  ++RL +  K++KE FL  +E  ++ +G+ M V V+E
Subjt:  SAVIVEERESSESSIDE-KTETKTFQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVME

Query:  PDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHSDALMRGEFVRVWYFR-----VNGNLWFGVEDVGEVK-KEFEILELMSEKWWHQNILAP
        PD  TVS + L++RR  + +  SY LTG W   V R+SDAL RG  VRVWYF      V   L F +E     K  + E ++ +++KWW QNI  P
Subjt:  PDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHSDALMRGEFVRVWYFR-----VNGNLWFGVEDVGEVK-KEFEILELMSEKWWHQNILAP

XP_039158352.1 uncharacterized protein LOC120288436 [Eucalyptus grandis]4.2e-0930.43Show/hide
Query:  PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTG
        PSK P ++ + I++       +++EK L   D++R + RL +  K+I++ FL++EE++ L   + ++++++EP  E    L+LK+ + K +   SY LT 
Subjt:  PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTG

Query:  GWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV
         W      ++ + LM+   +++W FRV+G+LWF ++ V
Subjt:  GWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV

XP_039158359.1 B3 domain-containing protein At2g32645-like [Eucalyptus grandis]5.4e-0931.88Show/hide
Query:  PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTG
        PSK P ++   I++       +++EK L   D++R + RL +  K+I++ FL+EEE++ L   + ++V+++EP  E    L+LK+   K +   SY LT 
Subjt:  PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTG

Query:  GWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV
         W      ++ + LM+   +++W FRV+G+LWF ++ V
Subjt:  GWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV

TrEMBL top hitse value%identityAlignment
A0A059ALZ8 Uncharacterized protein5.0e-0830.99Show/hide
Query:  FQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASY
        F   P K P  +   I++       +++EK L   D++R + RL    K+I++ FL EEE++ L   + ++V+++EP  E    L+LK+   K +   SY
Subjt:  FQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASY

Query:  ALTGGWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV
         LT  W      ++ + LM+   +++W FRV+G+LWF ++ V
Subjt:  ALTGGWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV

A0A059AMI0 Uncharacterized protein2.0e-0932.39Show/hide
Query:  FQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASY
        F   P + P R+ + I++       +++EK L   D++R + RL +  K+I++ FL+EEE++ L   + ++V+++EP  E VS L+LK+   + K + SY
Subjt:  FQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASY

Query:  ALTGGWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV
         LT  W      +  + LM+   +++W FRV+G+LWF ++ V
Subjt:  ALTGGWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV

A0A059AN92 Uncharacterized protein1.7e-0831.88Show/hide
Query:  PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTG
        PS+ P ++   I +       +++EK L   D++R + RL +  K++++ FL+EEE++ L   + ++V+++EP  E    LRLKK     K+  SY LT 
Subjt:  PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYALTG

Query:  GWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV
         W      ++ + LM+   +++W FRV+G+LWF +  V
Subjt:  GWYNTVTRHS-DALMRGEFVRVWYFRVNGNLWFGVEDV

A0A2C9VBB8 Uncharacterized protein9.4e-0733.08Show/hide
Query:  PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGE-TVSYLRLKKRRSKDKEVASYALT
        P + P  +   IE    +  ++++ K L   D+N   DRL +  K+IK  FLTE+E  KL   +++ V +MEP G  +  YLR    RS     + YALT
Subjt:  PSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGE-TVSYLRLKKRRSKDKEVASYALT

Query:  GGWYNTVTRHSDALMRGEFVRVWYFRVNGNLWF
          W   + R+ +   + + +++W FRV G L F
Subjt:  GGWYNTVTRHSDALMRGEFVRVWYFRVNGNLWF

A0A6J1DRC9 VID27-like protein3.1e-3438.18Show/hide
Query:  GETTGD---DNAPSSYNESEN-SEMIEAEEEGDIINVIDEETAAERGRGKKSAAEKMKIVNTETDQEATRSKEIEIGKQKIVYTNESTKS-------ASS
        GETT D   D+ P +Y+ +E+ +  +  EE  +  +  +EE     G G     E  ++     DQE T    +EI ++K V   E+T+S       AS+
Subjt:  GETTGD---DNAPSSYNESEN-SEMIEAEEEGDIINVIDEETAAERGRGKKSAAEKMKIVNTETDQEATRSKEIEIGKQKIVYTNESTKS-------ASS

Query:  SAVIVEERESSESSIDE-KTETKTFQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVME
        +A    +++SSES  +E +TE++   NFP  FP  F K + DP SI PRILMEK LR  DV+  ++RL +  K++KE FL  +E  ++ +G+ M V V+E
Subjt:  SAVIVEERESSESSIDE-KTETKTFQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVME

Query:  PDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHSDALMRGEFVRVWYFR-----VNGNLWFGVEDVGEVK-KEFEILELMSEKWWHQNILAP
        PD  TVS + L++RR  + +  SY LTG W   V R+SDAL RG  VRVWYF      V   L F +E     K  + E ++ +++KWW QNI  P
Subjt:  PDGETVSYLRLKKRRSKDKEVASYALTGGWYNTVTRHSDALMRGEFVRVWYFR-----VNGNLWFGVEDVGEVK-KEFEILELMSEKWWHQNILAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTTGCTACTGCCGCCGGCGAAACAACCGGCGACGACAATGCCCCATCTTCGTACAACGAGTCCGAAAACAGCGAAATGATTGAAGCGGAAGAAGAAGGGGACAT
CATCAACGTAATCGACGAAGAAACGGCGGCGGAAAGAGGAAGAGGAAAGAAATCGGCGGCGGAGAAGATGAAGATCGTCAACACCGAAACCGATCAAGAAGCAACACGAT
CTAAAGAAATTGAGATCGGAAAACAAAAGATCGTTTACACGAATGAATCAACGAAATCGGCGTCCTCCTCCGCCGTTATCGTAGAAGAACGAGAATCCTCTGAATCGAGC
ATAGACGAAAAAACAGAGACAAAAACCTTCCAGAACTTTCCATCGAAATTCCCCTACCGATTCGCGAAACTAATCGAAGATCCGAGCTCGATTCATCCTCGAATTTTGAT
GGAGAAGCCATTGCGGAGAGGGGACGTGAACAGGAGAAAAGATCGACTGTTGATGAAGGGGAAGAGGATAAAGGAACCGTTCTTGACGGAGGAGGAAATGAAGAAGTTGA
AATCCGGCAAGGTTATGAGAGTGGCGGTGATGGAGCCGGACGGCGAAACGGTGAGTTACTTGAGATTGAAAAAGCGGCGGAGCAAAGATAAGGAGGTGGCGTCGTACGCG
CTAACCGGAGGGTGGTATAATACGGTGACGCGTCACAGTGACGCGCTGATGAGAGGAGAATTTGTTAGGGTTTGGTATTTTCGCGTGAATGGTAATCTTTGGTTTGGAGT
TGAAGATGTTGGAGAAGTGAAGAAAGAATTTGAAATTTTGGAGCTAATGTCTGAGAAATGGTGGCACCAAAATATTTTGGCTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGTTGCTACTGCCGCCGGCGAAACAACCGGCGACGACAATGCCCCATCTTCGTACAACGAGTCCGAAAACAGCGAAATGATTGAAGCGGAAGAAGAAGGGGACAT
CATCAACGTAATCGACGAAGAAACGGCGGCGGAAAGAGGAAGAGGAAAGAAATCGGCGGCGGAGAAGATGAAGATCGTCAACACCGAAACCGATCAAGAAGCAACACGAT
CTAAAGAAATTGAGATCGGAAAACAAAAGATCGTTTACACGAATGAATCAACGAAATCGGCGTCCTCCTCCGCCGTTATCGTAGAAGAACGAGAATCCTCTGAATCGAGC
ATAGACGAAAAAACAGAGACAAAAACCTTCCAGAACTTTCCATCGAAATTCCCCTACCGATTCGCGAAACTAATCGAAGATCCGAGCTCGATTCATCCTCGAATTTTGAT
GGAGAAGCCATTGCGGAGAGGGGACGTGAACAGGAGAAAAGATCGACTGTTGATGAAGGGGAAGAGGATAAAGGAACCGTTCTTGACGGAGGAGGAAATGAAGAAGTTGA
AATCCGGCAAGGTTATGAGAGTGGCGGTGATGGAGCCGGACGGCGAAACGGTGAGTTACTTGAGATTGAAAAAGCGGCGGAGCAAAGATAAGGAGGTGGCGTCGTACGCG
CTAACCGGAGGGTGGTATAATACGGTGACGCGTCACAGTGACGCGCTGATGAGAGGAGAATTTGTTAGGGTTTGGTATTTTCGCGTGAATGGTAATCTTTGGTTTGGAGT
TGAAGATGTTGGAGAAGTGAAGAAAGAATTTGAAATTTTGGAGCTAATGTCTGAGAAATGGTGGCACCAAAATATTTTGGCTCCTTAA
Protein sequenceShow/hide protein sequence
MDVATAAGETTGDDNAPSSYNESENSEMIEAEEEGDIINVIDEETAAERGRGKKSAAEKMKIVNTETDQEATRSKEIEIGKQKIVYTNESTKSASSSAVIVEERESSESS
IDEKTETKTFQNFPSKFPYRFAKLIEDPSSIHPRILMEKPLRRGDVNRRKDRLLMKGKRIKEPFLTEEEMKKLKSGKVMRVAVMEPDGETVSYLRLKKRRSKDKEVASYA
LTGGWYNTVTRHSDALMRGEFVRVWYFRVNGNLWFGVEDVGEVKKEFEILELMSEKWWHQNILAP