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Lsi01G016700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G016700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein Ycf2
Genome locationchr01:15249632..15253427
RNA-Seq ExpressionLsi01G016700
SyntenyLsi01G016700
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFU96451.1 Ycf2, partial [Elaeodendron orientale]9.7e-1872.06Show/hide
Query:  WTCDHCHEISWLLRARLVQCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
        WT D    IS  ++ +   CNEG SYLYKWYFELGTSMKKLTILLYLLSCSAG V QDLWSLPG DE+
Subjt:  WTCDHCHEISWLLRARLVQCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
KAF3449800.1 hypothetical protein FNV43_RR05878 [Rhamnella rubrinervis]9.7e-1893.88Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
        CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAG V QDLWSLPGLDE+
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
OTF84341.1 hypothetical protein HannXRQ_Chr00c0585g0576211 [Helianthus annuus]7.4e-1884.13Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMIL
        CNE   YLY WYFELGTSMKKLTILLYLLSCSAG V QDLWSLPG DE K  SLLMDSLRMIL
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMIL
OTF84610.1 hypothetical protein HannXRQ_Chr00c0165g0572221 [Helianthus annuus]2.6e-1882.81Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMILI
        CNE   YLY WYFELGTSMKKLTILLYLLSCSAG V QDLWSLPG DE K  SLLMDSLRMIL+
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMILI
VDD25529.1 unnamed protein product [Brassica rapa]3.6e-2084.38Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMILI
        CNEG SYLYKWYFELGTSMKK TILLYLLSCSAG V QDLWSLPG DE+   SLLMDSLRMI I
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMILI
TrEMBL top hitse value%identityAlignment
A0A1Y3BTQ5 Uncharacterized protein3.6e-1884.13Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMIL
        CNE   YLY WYFELGTSMKKLTILLYLLSCSAG V QDLWSLPG DE K  SLLMDSLRMIL
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMIL
A0A1Y3BUG4 Uncharacterized protein1.2e-1882.81Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMILI
        CNE   YLY WYFELGTSMKKLTILLYLLSCSAG V QDLWSLPG DE K  SLLMDSLRMIL+
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMILI
A0A251TRI8 Putative ATPase, AAA-type, core3.6e-1884.13Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMIL
        CNE   YLY WYFELGTSMKKLTILLYLLSCSAG V QDLWSLPG DE K  SLLMDSLRMIL
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMIL
A0A3P6E287 Protein Ycf21.7e-2084.38Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMILI
        CNEG SYLYKWYFELGTSMKK TILLYLLSCSAG V QDLWSLPG DE+   SLLMDSLRMI I
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMILI
K4KC23 Ycf2 (Fragment)4.7e-1872.06Show/hide
Query:  WTCDHCHEISWLLRARLVQCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
        WT D    IS  ++ +   CNEG SYLYKWYFELGTSMKKLTILLYLLSCSAG V QDLWSLPG DE+
Subjt:  WTCDHCHEISWLLRARLVQCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
SwissProt top hitse value%identityAlignment
A4QLN7 Protein Ycf21.4e-1986.27Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKK
        CNEG SYLYKWYFELGTSMKK TILLYLLSCSAGLV QDLWSLPG DE+ +
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKK
B1A978 Protein Ycf25.3e-1989.8Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
        CNEG SYLYKWYFELGTSMKKLTILLYLLSCSAG V QDLWSLPG DE+
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
Q09MB4 Protein Ycf25.3e-1989.8Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
        CNEG SYLYKWYFELGTSMKKLTILLYLLSCSAG V QDLWSLPG DE+
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
Q0G9Q1 Protein Ycf25.3e-1989.8Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
        CNEG SYLYKWYFELGTSMKKLTILLYLLSCSAG V QDLWSLPG DE+
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQ
Q49KT6 Protein Ycf24.1e-1984.31Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKK
        CNEG SYLYKWYFELGTSMKKLTILLYLLSCSAG + QDLWSLPG DE+ +
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKK
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core5.5e-1982.35Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKK
        CNEG SYLYKWYFELGTSMKK TILLYLLSCSAG V QDLWSLP  DE+ +
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKK
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core5.5e-1982.35Show/hide
Query:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKK
        CNEG SYLYKWYFELGTSMKK TILLYLLSCSAG V QDLWSLP  DE+ +
Subjt:  CNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGAGTTTGGACATGTGACCATTGCCACGAAATTTCGTGGCTATTACGAGCTCGTTTGGTTCAATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTACTTCGA
ACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATTGGTCGTTCAAGACCTTTGGTCTCTACCCGGACTGGATGAACAAAAAA
AGAGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGGAGTTTGGACATGTGACCATTGCCACGAAATTTCGTGGCTATTACGAGCTCGTTTGGTTCAATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTACTTCGA
ACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATTGGTCGTTCAAGACCTTTGGTCTCTACCCGGACTGGATGAACAAAAAA
AGAGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAG
Protein sequenceShow/hide protein sequence
MTGVWTCDHCHEISWLLRARLVQCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGLVVQDLWSLPGLDEQKKRSLLMDSLRMILI