; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G017130 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G017130
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncleavage stimulation factor subunit 77
Genome locationchr01:15839057..15864448
RNA-Seq ExpressionLsi01G017130
SyntenyLsi01G017130
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR003107 - HAT (Half-A-TPR) repeat
IPR008847 - Suppressor of forked
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR019734 - Tetratricopeptide repeat


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442046.1 PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis melo]2.0e-14068.04Show/hide
Query:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR
        MASEGS+SKDKTTSNKLLDGLKYNVEVAESVA +AQ                                               C L+     L R CYIR
Subjt:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR

Query:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL
        FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEES RMTAVRKVYQKAIITPTHHIEQLWRDYENFENS     AKGL
Subjt:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL

Query:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS
        VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK                                     CLMYLYHYPDVWYDYA+W A+NGS
Subjt:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS

Query:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
        ID AIKVFQRALKALPDSDMLKYAYAELEESRGSLQA    +        N+   ++H    +QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
Subjt:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA

Query:  MMAFCLDKDPKVS
        MMAFCLDKDPK++
Subjt:  MMAFCLDKDPKVS

XP_011653953.1 cleavage stimulation factor subunit 77 [Cucumis sativus]9.9e-14067.8Show/hide
Query:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR
        MASEGS+SKDKTTSNKLLDGLKYNVEVAESVAN+AQ                                               C L+     L R CYIR
Subjt:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR

Query:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL
        FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEES RMTAVRKVYQKAIITPTHHIEQLWRDYENFENS     AKGL
Subjt:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL

Query:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS
        VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGS K                                     CLMYLYHYPDVWYDYAMW A+NGS
Subjt:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS

Query:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
        ID AIKVFQRALKALPDSDMLK+AYAELEESRGSLQ+    +        N+   ++H    +QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
Subjt:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA

Query:  MMAFCLDKDPKVS
        MMAFCLDKDPK++
Subjt:  MMAFCLDKDPKVS

XP_016899569.1 PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis melo]2.0e-14068.04Show/hide
Query:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR
        MASEGS+SKDKTTSNKLLDGLKYNVEVAESVA +AQ                                               C L+     L R CYIR
Subjt:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR

Query:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL
        FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEES RMTAVRKVYQKAIITPTHHIEQLWRDYENFENS     AKGL
Subjt:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL

Query:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS
        VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK                                     CLMYLYHYPDVWYDYA+W A+NGS
Subjt:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS

Query:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
        ID AIKVFQRALKALPDSDMLKYAYAELEESRGSLQA    +        N+   ++H    +QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
Subjt:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA

Query:  MMAFCLDKDPKVS
        MMAFCLDKDPK++
Subjt:  MMAFCLDKDPKVS

XP_022154466.1 cleavage stimulation factor subunit 77 isoform X1 [Momordica charantia]6.0e-13766.5Show/hide
Query:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ------------CCLSV-----------------------SKHGLERC-----------CYIRF
        MAS+G+ESKDK+ SNKLLD LKYNVEVAE VANDAQ              L+V                       +K    RC           CYIRF
Subjt:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ------------CCLSV-----------------------SKHGLERC-----------CYIRF

Query:  IKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLV
        IKKVNERKGMEGQEETRKAFDFMLSYLGVDI+SGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS     AKGL+
Subjt:  IKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLV

Query:  SEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGSI
        SEYQPKFNSARAVYRERKKYVDEIDCN+LAVPPTGSPK                                     CLMYLYHYPDVWYDYA W ANNGSI
Subjt:  SEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGSI

Query:  DVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAM
        + AIKVFQRAL ALPDSDMLKYAYAELEESRG+LQ+    +        N+   ++H    +QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAM
Subjt:  DVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAM

Query:  MAFCLDKDPKVS
        MAFCLDKDPK++
Subjt:  MAFCLDKDPKVS

XP_038881157.1 cleavage stimulation factor subunit 77 [Benincasa hispida]4.9e-13968.04Show/hide
Query:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR
        M SEGSESKDKTTSNKLLDGLKYNVEVAESVAN+AQ                                               C L+     L R CYIR
Subjt:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR

Query:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL
        FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQ ESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS     AKGL
Subjt:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL

Query:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS
        VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK                                     CLMYLYHYPDVWYDYAMW ANNGS
Subjt:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS

Query:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
         D AIKVFQRALKALP+SDMLKYAYAELEESRGSLQ+    +        N+   ++H    +QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
Subjt:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA

Query:  MMAFCLDKDPKVS
        MMAFCLDKDPK++
Subjt:  MMAFCLDKDPKVS

TrEMBL top hitse value%identityAlignment
A0A1S3B5G2 cleavage stimulation factor subunit 77 isoform X19.7e-14168.04Show/hide
Query:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR
        MASEGS+SKDKTTSNKLLDGLKYNVEVAESVA +AQ                                               C L+     L R CYIR
Subjt:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR

Query:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL
        FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEES RMTAVRKVYQKAIITPTHHIEQLWRDYENFENS     AKGL
Subjt:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL

Query:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS
        VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK                                     CLMYLYHYPDVWYDYA+W A+NGS
Subjt:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS

Query:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
        ID AIKVFQRALKALPDSDMLKYAYAELEESRGSLQA    +        N+   ++H    +QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
Subjt:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA

Query:  MMAFCLDKDPKVS
        MMAFCLDKDPK++
Subjt:  MMAFCLDKDPKVS

A0A1S4DUB4 cleavage stimulation factor subunit 77 isoform X29.7e-14168.04Show/hide
Query:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR
        MASEGS+SKDKTTSNKLLDGLKYNVEVAESVA +AQ                                               C L+     L R CYIR
Subjt:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ-----------------------------------------------CCLSVSKHGLERCCYIR

Query:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL
        FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEES RMTAVRKVYQKAIITPTHHIEQLWRDYENFENS     AKGL
Subjt:  FIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGL

Query:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS
        VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK                                     CLMYLYHYPDVWYDYA+W A+NGS
Subjt:  VSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGS

Query:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
        ID AIKVFQRALKALPDSDMLKYAYAELEESRGSLQA    +        N+   ++H    +QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA
Subjt:  IDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYA

Query:  MMAFCLDKDPKVS
        MMAFCLDKDPK++
Subjt:  MMAFCLDKDPKVS

A0A6J1DLS0 cleavage stimulation factor subunit 77 isoform X22.9e-13766.5Show/hide
Query:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ------------CCLSV-----------------------SKHGLERC-----------CYIRF
        MAS+G+ESKDK+ SNKLLD LKYNVEVAE VANDAQ              L+V                       +K    RC           CYIRF
Subjt:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ------------CCLSV-----------------------SKHGLERC-----------CYIRF

Query:  IKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLV
        IKKVNERKGMEGQEETRKAFDFMLSYLGVDI+SGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS     AKGL+
Subjt:  IKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLV

Query:  SEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGSI
        SEYQPKFNSARAVYRERKKYVDEIDCN+LAVPPTGSPK                                     CLMYLYHYPDVWYDYA W ANNGSI
Subjt:  SEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGSI

Query:  DVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAM
        + AIKVFQRAL ALPDSDMLKYAYAELEESRG+LQ+    +        N+   ++H    +QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAM
Subjt:  DVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAM

Query:  MAFCLDKDPKVS
        MAFCLDKDPK++
Subjt:  MAFCLDKDPKVS

A0A6J1DNS9 cleavage stimulation factor subunit 77 isoform X12.9e-13766.5Show/hide
Query:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ------------CCLSV-----------------------SKHGLERC-----------CYIRF
        MAS+G+ESKDK+ SNKLLD LKYNVEVAE VANDAQ              L+V                       +K    RC           CYIRF
Subjt:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ------------CCLSV-----------------------SKHGLERC-----------CYIRF

Query:  IKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLV
        IKKVNERKGMEGQEETRKAFDFMLSYLGVDI+SGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS     AKGL+
Subjt:  IKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLV

Query:  SEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGSI
        SEYQPKFNSARAVYRERKKYVDEIDCN+LAVPPTGSPK                                     CLMYLYHYPDVWYDYA W ANNGSI
Subjt:  SEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGSI

Query:  DVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAM
        + AIKVFQRAL ALPDSDMLKYAYAELEESRG+LQ+    +        N+   ++H    +QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAM
Subjt:  DVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAM

Query:  MAFCLDKDPKVS
        MAFCLDKDPK++
Subjt:  MAFCLDKDPKVS

A0A6J1EAY7 cleavage stimulation factor subunit 778.5e-13766.27Show/hide
Query:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ------------CCLSV-----------------------SKHGLERC-----------CYIRF
        M SEGSESKDKT SNKL+D LKYNVEVAE+VA +AQ              L+V                       +K    RC           CYIRF
Subjt:  MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQ------------CCLSV-----------------------SKHGLERC-----------CYIRF

Query:  IKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLV
        IKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTA+RKVYQ+AIITPTHHIEQLWRDYENFENS     AKGL+
Subjt:  IKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLV

Query:  SEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGSI
        SEYQPKFNSARAVYRERKKYVDEID NMLAVPPTGSPK                                     CLMYLYHYPDVWYDYAMW ANNGSI
Subjt:  SEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK-------------------------------------CLMYLYHYPDVWYDYAMWQANNGSI

Query:  DVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLG------RISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHV
        D AIKVFQRALKALP SDMLKYAYAELEESRGSLQ+    +       E+ LG       ++H    +QFIRFLRRNEGVEAARKHFLDARKSPNCTYHV
Subjt:  DVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLG------RISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHV

Query:  YVAYAMMAFCLDKDPKVS
        YVAYAMMAFCLDKDPK++
Subjt:  YVAYAMMAFCLDKDPKVS

SwissProt top hitse value%identityAlignment
P25991 Protein suppressor of forked1.5e-2925.96Show/hide
Query:  YIRFIKKVNERKGME-GQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENSAKGLV
        Y+ ++K+   + G+   +E+  +A+DF L  +G+D+ S  +W +YI FL+ + A+ +  E+Q++TAVR+VYQKA++TP   IEQLW+DY  FE +   ++
Subjt:  YIRFIKKVNERKGME-GQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQLWRDYENFENSAKGLV

Query:  S-----EYQPKFNSARAVYRERKKYVDEIDCNMLAVPPT--------------------------------------GSPKCLMYLYHYPDVWYD-----
        S     E    + +AR V +E + +   ++ N+ AVPPT                                       + +CL+ L H+P VW+      
Subjt:  S-----EYQPKFNSARAVYRERKKYVDEIDCNMLAVPPT--------------------------------------GSPKCLMYLYHYPDVWYD-----

Query:  ------------------------------------YAMW-----QANNGSIDVAIKVFQRALKALPDSDMLKY-AYAELEESRGSLQAWSLDFPQHFVY
                                            +A W     QA     D    + +R++  + + + L Y AYA+ EE R   +        H +Y
Subjt:  ------------------------------------YAMW-----QANNGSIDVAIKVFQRALKALPDSDMLKY-AYAELEESRGSLQAWSLDFPQHFVY

Query:  LE-NSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS
         +   L  I    + +Q+++F RR EG+++AR  F  AR+     YH++VA A+M +   KD +++
Subjt:  LE-NSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS

Q12996 Cleavage stimulation factor subunit 32.5e-3729.71Show/hide
Query:  QCCLSVSKHGLERCCYIRFIKKVNERKGM--EGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQ
        +C + V    L +C    ++  V E KG     +E+  +A+DF L  +G++I S  +W++YI FLK + A+ S  E+QR+TAVR+VYQ+  + P  +IEQ
Subjt:  QCCLSVSKHGLERCCYIRFIKKVNERKGM--EGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQ

Query:  LWRDYENFENS-----AKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSP--------------------------------------KCLM
        LWRDY  +E       AK ++ +    + +AR V +E +  +  +D N  +VPP  +P                                      +CL+
Subjt:  LWRDYENFENS-----AKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSP--------------------------------------KCLM

Query:  YLYHYPDVWYDYAMW------------QANNGSI--DVAIKVFQRALKALPDSDMLKY-AYAELEESRGSLQAWSLDFPQHFVYLE-NSLGRISHWWLVM
         L H+PD+WY+ A +              NN  +  D A  +++RA+  L   +ML Y AYA+ EESR   +        H +Y    ++  I    + +
Subjt:  YLYHYPDVWYDYAMW------------QANNGSI--DVAIKVFQRALKALPDSDMLKY-AYAELEESRGSLQAWSLDFPQHFVYLE-NSLGRISHWWLVM

Query:  QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS
        Q+++F RR EG+++ R  F  AR+     +HVYV  A+M +   KD  V+
Subjt:  QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS

Q5RDW9 Cleavage stimulation factor subunit 32.5e-3729.71Show/hide
Query:  QCCLSVSKHGLERCCYIRFIKKVNERKGM--EGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQ
        +C + V    L +C    ++  V E KG     +E+  +A+DF L  +G++I S  +W++YI FLK + A+ S  E+QR+TAVR+VYQ+  + P  +IEQ
Subjt:  QCCLSVSKHGLERCCYIRFIKKVNERKGM--EGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQ

Query:  LWRDYENFENS-----AKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSP--------------------------------------KCLM
        LWRDY  +E       AK ++ +    + +AR V +E +  +  +D N  +VPP  +P                                      +CL+
Subjt:  LWRDYENFENS-----AKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSP--------------------------------------KCLM

Query:  YLYHYPDVWYDYAMW------------QANNGSI--DVAIKVFQRALKALPDSDMLKY-AYAELEESRGSLQAWSLDFPQHFVYLE-NSLGRISHWWLVM
         L H+PD+WY+ A +              NN  +  D A  +++RA+  L   +ML Y AYA+ EESR   +        H +Y    ++  I    + +
Subjt:  YLYHYPDVWYDYAMW------------QANNGSI--DVAIKVFQRALKALPDSDMLKY-AYAELEESRGSLQAWSLDFPQHFVYLE-NSLGRISHWWLVM

Query:  QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS
        Q+++F RR EG+++ R  F  AR+     +HVYV  A+M +   KD  V+
Subjt:  QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS

Q8GUP1 Cleavage stimulation factor subunit 771.2e-10857.67Show/hide
Query:  KYNVEVAESVAND-------AQCCLSVSKHGLERCCYIRFIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMT
        K  VE   +V ND       ++C L+  +  L + CYIRFI+KV ++KG EGQEET KAF+FML+Y+G DI+SGP+W EYIAFLKSLPAL+  E+  R T
Subjt:  KYNVEVAESVAND-------AQCCLSVSKHGLERCCYIRFIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMT

Query:  AVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK----------------------
        A+RKVY +AI+TPTHH+EQLW+DYENFEN+     AKGLV+EYQPKFNSARAVYRERKKY++EID NMLAVPPTG+ K                      
Subjt:  AVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK----------------------

Query:  ---------------CLMYLYHYPDVWYDYAMWQANNGSIDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWL
                       CLM LYHYPDVWYDYA W   +GS D AIKVFQRALKA+PDS+MLKYA+AE+EESRG++Q+    +       EN LG  ++   
Subjt:  ---------------CLMYLYHYPDVWYDYAMWQANNGSIDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWL

Query:  VMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS
         +Q++RFLRR EGVEAARK+FLDARKSP+CTYHVY+A+A MAFC+DK+PKV+
Subjt:  VMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS

Q99LI7 Cleavage stimulation factor subunit 32.5e-3729.71Show/hide
Query:  QCCLSVSKHGLERCCYIRFIKKVNERKGM--EGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQ
        +C + V    L +C    ++  V E KG     +E+  +A+DF L  +G++I S  +W++YI FLK + A+ S  E+QR+TAVR+VYQ+  + P  +IEQ
Subjt:  QCCLSVSKHGLERCCYIRFIKKVNERKGM--EGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAVRKVYQKAIITPTHHIEQ

Query:  LWRDYENFENS-----AKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSP--------------------------------------KCLM
        LWRDY  +E       AK ++ +    + +AR V +E +  +  +D N  +VPP  +P                                      +CL+
Subjt:  LWRDYENFENS-----AKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSP--------------------------------------KCLM

Query:  YLYHYPDVWYDYAMW------------QANNGSI--DVAIKVFQRALKALPDSDMLKY-AYAELEESRGSLQAWSLDFPQHFVYLE-NSLGRISHWWLVM
         L H+PD+WY+ A +              NN  +  D A  +++RA+  L   +ML Y AYA+ EESR   +        H +Y    ++  I    + +
Subjt:  YLYHYPDVWYDYAMW------------QANNGSI--DVAIKVFQRALKALPDSDMLKY-AYAELEESRGSLQAWSLDFPQHFVYLE-NSLGRISHWWLVM

Query:  QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS
        Q+++F RR EG+++ R  F  AR+     +HVYV  A+M +   KD  V+
Subjt:  QFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS

Arabidopsis top hitse value%identityAlignment
AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.7e-11057.67Show/hide
Query:  KYNVEVAESVAND-------AQCCLSVSKHGLERCCYIRFIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMT
        K  VE   +V ND       ++C L+  +  L + CYIRFI+KV ++KG EGQEET KAF+FML+Y+G DI+SGP+W EYIAFLKSLPAL+  E+  R T
Subjt:  KYNVEVAESVAND-------AQCCLSVSKHGLERCCYIRFIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMT

Query:  AVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK----------------------
        A+RKVY +AI+TPTHH+EQLW+DYENFEN+     AKGLV+EYQPKFNSARAVYRERKKY++EID NMLAVPPTG+ K                      
Subjt:  AVRKVYQKAIITPTHHIEQLWRDYENFENS-----AKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPK----------------------

Query:  ---------------CLMYLYHYPDVWYDYAMWQANNGSIDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWL
                       CLM LYHYPDVWYDYA W   +GS D AIKVFQRALKA+PDS+MLKYA+AE+EESRG++Q+    +       EN LG  ++   
Subjt:  ---------------CLMYLYHYPDVWYDYAMWQANNGSIDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWL

Query:  VMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS
         +Q++RFLRR EGVEAARK+FLDARKSP+CTYHVY+A+A MAFC+DK+PKV+
Subjt:  VMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVS

AT3G13210.1 crooked neck protein, putative / cell cycle protein, putative8.4e-0425.95Show/hide
Query:  VWYDYAMWQANNGSIDVAIKVFQRALKALPDSDMLKYAYAELEESRGSL-----------------QAWSLDFPQHFVYLENSLGRISHWWLVM------
        VW  YA ++  N S++ A  V+ RA+  LP  D L Y +  +EE  G++                 QAW         Y E    R  +   V+      
Subjt:  VWYDYAMWQANNGSIDVAIKVFQRALKALPDSDMLKYAYAELEESRGSL-----------------QAWSLDFPQHFVYLENSLGRISHWWLVM------

Query:  ---QFIRFLRRNEGVEAARKHFLDARK---SPNCTYHVYVAYA----MMAFCLDKDPK
           ++ +F  ++  VE A K F  A+K          ++VA+A       F LD+ PK
Subjt:  ---QFIRFLRRNEGVEAARKHFLDARK---SPNCTYHVYVAYA----MMAFCLDKDPK

AT5G41770.1 crooked neck protein, putative / cell cycle protein, putative8.4e-0429.59Show/hide
Query:  YHYPDVWYDYAMWQANNGSIDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAAR
        Y    +W  YA ++  N  ++ A  V+ RA+  LP  D L Y Y  +EE  G++      F +   +  +  G     WL   FI+F  R   +E AR
Subjt:  YHYPDVWYDYAMWQANNGSIDVAIKVFQRALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAGAGGGATCTGAATCAAAGGATAAAACAACTAGCAACAAGCTTTTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAAGTGTTGCTAATGACGCGCAGTG
TTGCCTGTCTGTCTCTAAGCATGGATTGGAGAGGTGTTGCTACATCCGATTCATTAAGAAGGTGAATGAAAGGAAAGGAATGGAAGGCCAGGAGGAAACCAGAAAAGCTT
TTGATTTTATGCTTAGCTATCTTGGTGTTGACATATCATCTGGCCCTGTGTGGATGGAATACATTGCCTTCTTAAAGTCACTGCCGGCTCTAAGTTCGCAGGAGGAGTCA
CAGCGTATGACTGCAGTGCGGAAGGTCTACCAGAAAGCTATTATCACTCCTACCCATCACATTGAGCAACTATGGAGGGACTATGAAAATTTTGAGAATTCTGCCAAGGG
ACTAGTGTCTGAATATCAACCAAAATTTAATAGTGCTCGAGCTGTCTATAGAGAGAGGAAGAAATACGTTGATGAGATTGATTGCAACATGCTTGCCGTACCACCAACTG
GCTCCCCAAAGTGTCTTATGTACCTGTACCATTATCCTGATGTATGGTACGATTATGCTATGTGGCAAGCAAATAATGGATCAATAGATGTTGCAATTAAAGTATTTCAG
CGAGCTTTGAAGGCTCTTCCTGACTCGGATATGCTAAAATATGCTTACGCCGAGCTAGAAGAATCTCGTGGATCACTTCAGGCATGGAGTCTTGATTTCCCTCAACATTT
TGTATATCTAGAGAATTCTTTGGGAAGGATATCACACTGGTGGCTTGTGATGCAGTTTATCCGTTTTCTTAGAAGAAATGAAGGAGTTGAGGCTGCTCGCAAGCACTTCT
TGGATGCTCGCAAATCCCCAAATTGCACATATCATGTTTATGTTGCTTATGCTATGATGGCCTTTTGTCTCGACAAGGATCCCAAGGTCTCTCTCTTTCCACCTTGA
mRNA sequenceShow/hide mRNA sequence
GCAAATTTGTTCATCTAAAAAATTAATGTTATATTGCCGTCACAATCTCACTATTCTTTTCTCCTTCAAAATTTAGAGATTAAATTCGACCAAAGTCCACTGTAGATTTC
AATTTGGCGGCCGAAATCATACTCTTCTTCCCACTTCTCGGATTTATGAACTAAGCTTGTTTCTGCTCTAGCTTTCGCAGCGAAGCAGACCAGTATAACTTATACCATCA
CTGCTCTATTTACACGCACTCTCTTCACTATGGCATCAGAGGGATCTGAATCAAAGGATAAAACAACTAGCAACAAGCTTTTGGATGGTTTGAAGTACAATGTTGAAGTG
GCAGAAAGTGTTGCTAATGACGCGCAGTGTTGCCTGTCTGTCTCTAAGCATGGATTGGAGAGGTGTTGCTACATCCGATTCATTAAGAAGGTGAATGAAAGGAAAGGAAT
GGAAGGCCAGGAGGAAACCAGAAAAGCTTTTGATTTTATGCTTAGCTATCTTGGTGTTGACATATCATCTGGCCCTGTGTGGATGGAATACATTGCCTTCTTAAAGTCAC
TGCCGGCTCTAAGTTCGCAGGAGGAGTCACAGCGTATGACTGCAGTGCGGAAGGTCTACCAGAAAGCTATTATCACTCCTACCCATCACATTGAGCAACTATGGAGGGAC
TATGAAAATTTTGAGAATTCTGCCAAGGGACTAGTGTCTGAATATCAACCAAAATTTAATAGTGCTCGAGCTGTCTATAGAGAGAGGAAGAAATACGTTGATGAGATTGA
TTGCAACATGCTTGCCGTACCACCAACTGGCTCCCCAAAGTGTCTTATGTACCTGTACCATTATCCTGATGTATGGTACGATTATGCTATGTGGCAAGCAAATAATGGAT
CAATAGATGTTGCAATTAAAGTATTTCAGCGAGCTTTGAAGGCTCTTCCTGACTCGGATATGCTAAAATATGCTTACGCCGAGCTAGAAGAATCTCGTGGATCACTTCAG
GCATGGAGTCTTGATTTCCCTCAACATTTTGTATATCTAGAGAATTCTTTGGGAAGGATATCACACTGGTGGCTTGTGATGCAGTTTATCCGTTTTCTTAGAAGAAATGA
AGGAGTTGAGGCTGCTCGCAAGCACTTCTTGGATGCTCGCAAATCCCCAAATTGCACATATCATGTTTATGTTGCTTATGCTATGATGGCCTTTTGTCTCGACAAGGATC
CCAAGGTCTCTCTCTTTCCACCTTGATATGCAGATTTCCTTGCTCGCTTGAATGATGACAGAAATATTCGGGCTTTATTTGAGCGTGCTTTAAGTACCTTGCCTCTAGAG
GAGTCTGCTGAGGTTGAAAAAAGAAGAAAGGAAGCTCTTTTTCAAATGGGTGAAGATGGAGCATCAACATTGGAAAGTTCATTGCAAGATGTTGTGTCCAGGTATAGTTT
TATGGATCTCTGGCCATGCACATCTAGTGATCTGGACAATTTGACCAGACAAGAGTGGCTCGCTAAGAACATAAATAAAAACTTGGAAAAATCTGGTCTGCCTAGTGGAA
CTGGCTTTTTAGATACTGGTTCTGCTGGTTTTATGAGCCATTCAATTCCATCTACAAAGGTTGTTTATCCTGATACCTCTCAGATGGTGATTTATGACCCAAGCCAAAAA
TTAGGTCCAACCCCAGATGTTGATATTGTACTATCAGTTTGTCTTGAGAGTGACATACCTACAGTTCCATTGGTCAAATCAGGGGCAACACCACCACAAGTTTCAGGCGG
TCCTGTTCCTACCACTAGTGACCTTTCTGGTTCAAGCAAGTCTCATGCATTTTCAAATTCCTCCCTAAAGCATACCAGAGACAGGCAATCAGCAAAGAGAAAAGATTACG
ACAGACAAGAGGATAATGAAAGTACAACAGTCCAAAGTCAGCCATTGCCTAAAGATTTTTTCAGGATACGACAAATCCAGAAAGCAAGAGGAGCTACTTCTTCCCAAACA
GGTTCTGCTTCTTATGGAAGTGCTATTTCTGGAGATCTGTCTGGTAGCACTGGTTGAATTCAGTATGCCTTTTCTTTTTCTAAATTTTTATTAAAGTCGATTCTTTCCCA
TTTAAATTGATAATAGATACTCTAGTTTACCATAAACTTTTATCTTTTAAAGAAATCTAGTACAAACATCATTTTGCTTCAAAATCTTATACTTGTTACATTCATAGCTG
ACATAATTCTTTTCTCCTAACAAAAGCATCTGTTTATAATGATGAATGTACATTATTGTGGCT
Protein sequenceShow/hide protein sequence
MASEGSESKDKTTSNKLLDGLKYNVEVAESVANDAQCCLSVSKHGLERCCYIRFIKKVNERKGMEGQEETRKAFDFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEES
QRMTAVRKVYQKAIITPTHHIEQLWRDYENFENSAKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPKCLMYLYHYPDVWYDYAMWQANNGSIDVAIKVFQ
RALKALPDSDMLKYAYAELEESRGSLQAWSLDFPQHFVYLENSLGRISHWWLVMQFIRFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKVSLFPP