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Lsi01G017170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G017170
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMitochondrial import inner membrane translocase subunit
Genome locationchr01:15903256..15906439
RNA-Seq ExpressionLsi01G017170
SyntenyLsi01G017170
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0005758 - mitochondrial intermembrane space (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004217 - Tim10-like
IPR035427 - Tim10-like domain superfamily
IPR039238 - Mitochondrial import inner membrane translocase subunit Tim8/13


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023044.1 Mitochondrial import inner membrane translocase subunit TIM8, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-3296.05Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQD
        MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCW KC+TGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ+
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQD

XP_008464391.1 PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis melo]6.5e-3498.7Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS
        MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ+S
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS

XP_011073110.1 mitochondrial import inner membrane translocase subunit TIM8 [Sesamum indicum]5.4e-2882.67Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ
        MD SSLNSPEL  F+N+EK++AMV EM+ KLTS CWDKCITGTPGSKFSSSESNCL+NCAQRYMDMS+IIMKRFQ
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ

XP_022135207.1 mitochondrial import inner membrane translocase subunit TIM8 [Momordica charantia]1.9e-3397.4Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS
        MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITG+PGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ+S
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS

XP_022872200.1 mitochondrial import inner membrane translocase subunit TIM8-like [Olea europaea var. sylvestris]3.1e-2882.89Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQD
        MDSSSLNSPEL  FI++EK++AMV EM+AKLT+VCWDKCITGTPGSKFSSSES+CL+NCAQRYMDMS+IIMKRFQ+
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQD

TrEMBL top hitse value%identityAlignment
A0A0A0LTY7 Mitochondrial import inner membrane translocase subunit3.2e-3498.7Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS
        MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ+S
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS

A0A1S3CLD0 Mitochondrial import inner membrane translocase subunit3.2e-3498.7Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS
        MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ+S
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS

A0A6J1C212 Mitochondrial import inner membrane translocase subunit9.2e-3497.4Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS
        MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITG+PGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ+S
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS

A0A6J1E0G1 Mitochondrial import inner membrane translocase subunit3.2e-3498.7Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS
        MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ+S
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS

A0A6J1IHF0 Mitochondrial import inner membrane translocase subunit3.2e-3498.7Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS
        MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ+S
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS

SwissProt top hitse value%identityAlignment
P0CR94 Mitochondrial import inner membrane translocase subunit TIM82.4e-1040.91Show/hide
Query:  ELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ
        EL +F+ +E+ +A +   + +LT+ CW+ CITG   SKFS SE+ CL NC  R++D S+ I+++ +
Subjt:  ELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ

P0CR95 Mitochondrial import inner membrane translocase subunit TIM82.4e-1040.91Show/hide
Query:  ELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ
        EL +F+ +E+ +A +   + +LT+ CW+ CITG   SKFS SE+ CL NC  R++D S+ I+++ +
Subjt:  ELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQ

Q09783 Mitochondrial import inner membrane translocase subunit tim84.4e-0939.73Show/hide
Query:  DSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRF
        D S     EL  FI  E+Q+  + + + + TS CW KCI G  G+K   SE  CL NC +R++D +  I+KR+
Subjt:  DSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRF

Q9XGY4 Mitochondrial import inner membrane translocase subunit TIM84.0e-2674.32Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRF
        MD S  N+PEL+ F+ +EK+RAMV EMV+K+TSVCWDKCIT  PGSKFSSSES+CL++CAQRYMDMS+IIMKRF
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRF

Q9Y1A3 Mitochondrial import inner membrane translocase subunit Tim82.0e-0939.73Show/hide
Query:  DSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRF
        ++ S N  EL  F+  EKQ+A V   + +   +CW+KCI G P +K   +   CLSNC  R++D S++I +RF
Subjt:  DSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRF

Arabidopsis top hitse value%identityAlignment
AT1G61570.1 translocase of the inner mitochondrial membrane 136.6e-0839.44Show/hide
Query:  SSSLNSPE-LMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMK
        S S  SPE +M  +  +  +A   E++  L + C+DKC+T  PGS    SES+C+S C +RYM+ + II +
Subjt:  SSSLNSPE-LMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMK

AT5G50810.1 translocase inner membrane subunit 82.8e-2774.32Show/hide
Query:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRF
        MD S  N+PEL+ F+ +EK+RAMV EMV+K+TSVCWDKCIT  PGSKFSSSES+CL++CAQRYMDMS+IIMKRF
Subjt:  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCTCGTCTCTTAACTCCCCAGAGCTGATGAATTTTATCAATGAAGAGAAGCAAAGAGCTATGGTTGCTGAGATGGTAGCTAAGCTTACCAGTGTGTGTTGGGA
CAAGTGCATTACTGGTACACCAGGGAGTAAATTCAGCTCTAGTGAATCCAACTGTCTATCAAACTGTGCTCAACGCTATATGGATATGAGCATTATCATTATGAAACGAT
TCCAAGACAGTTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAAAAACTCAGTTTCTTCATCTTTGCCCTTTCCCTCCCTTTGGCTTTATTTCCCTTCCCTCAGCCCGCGTCGTCTTTCTCGTCACCGTTTGGAACTTTCCT
CACCGTCGATCGCCGATTTGCAGTGGCAGTGAGTCCGTTGATTTCCGTCTAACACGTCCGTCGATTTCTGTTCTCTCACATTCAGGGCCTCAGGCTTTGCTGTTCTTCAG
TGGCATTAGGGTTTTGCAGTCCGTCACTACTCACGGCTGGGGAGCAACTCATCAACCTTACTAAGTTTCCATGGATTCCTCGTCTCTTAACTCCCCAGAGCTGATGAATT
TTATCAATGAAGAGAAGCAAAGAGCTATGGTTGCTGAGATGGTAGCTAAGCTTACCAGTGTGTGTTGGGACAAGTGCATTACTGGTACACCAGGGAGTAAATTCAGCTCT
AGTGAATCCAACTGTCTATCAAACTGTGCTCAACGCTATATGGATATGAGCATTATCATTATGAAACGATTCCAAGACAGTTGA
Protein sequenceShow/hide protein sequence
MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQDS