; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G017200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G017200
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionexosome complex component RRP4 homolog
Genome locationchr01:15943538..15951446
RNA-Seq ExpressionLsi01G017200
SyntenyLsi01G017200
Gene Ontology termsGO:0000178 - exosome (RNase complex) (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1
IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR036612 - K Homology domain, type 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606437.1 Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.5e-16790.83Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+ LN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL+G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTA+DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQLLTV PYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDM++ED +NKSEQKGSKFEG+FGNQV+ER+YTPLETRQNICRTANAIRVLSILGFI++VE+IME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV

Query:  HEMLGAEFCVLTVEKEVERRTSSKKRG
        HEMLG+EFCVLT EKE ERRTSSKKRG
Subjt:  HEMLGAEFCVLTVEKEVERRTSSKKRG

XP_022995373.1 exosome complex component RRP4 homolog [Cucurbita maxima]7.3e-16790.83Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+ LN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTA+DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQLLTV PYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDM++ED +NKSEQKGSKFEG+FGNQV+ER+YTPLETRQNICRTANAIRVLSILGFI++VE+IME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV

Query:  HEMLGAEFCVLTVEKEVERRTSSKKRG
        HEMLG+EFCVLT EKE ERRTSSKKRG
Subjt:  HEMLGAEFCVLTVEKEVERRTSSKKRG

XP_023533481.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo]9.5e-16790.52Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+ LN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL+G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTA+DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQLLTV PYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDM++ED +NKSEQKGSKFEG FGNQV+ER+YTPLETRQNICRTANAIRVLSILGFI++VE+IME VSL IS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV

Query:  HEMLGAEFCVLTVEKEVERRTSSKKRG
        HEMLG+EFCVLT EKE ERRTSSKKRG
Subjt:  HEMLGAEFCVLTVEKEVERRTSSKKRG

XP_038882864.1 exosome complex component RRP4 homolog isoform X1 [Benincasa hispida]1.3e-17194.19Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQI LNHTQKIRLQRA+ERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDL+G+V+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVP YLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDM+I+DQ+NKSEQKG KFEGTF NQV++RVYTPLETRQNICRTANAIRVLSILGFI+TVE+IMEIVSLSISMNIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV

Query:  HEMLGAEFCVLTVEKEVERRTSSKKRG
        HEMLG+EFCVLT EKEVERRTSSKKRG
Subjt:  HEMLGAEFCVLTVEKEVERRTSSKKRG

XP_038882865.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida]1.3e-17194.19Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQI LNHTQKIRLQRA+ERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDL+G+V+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVP YLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDM+I+DQ+NKSEQKG KFEGTF NQV++RVYTPLETRQNICRTANAIRVLSILGFI+TVE+IMEIVSLSISMNIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV

Query:  HEMLGAEFCVLTVEKEVERRTSSKKRG
        HEMLG+EFCVLT EKEVERRTSSKKRG
Subjt:  HEMLGAEFCVLTVEKEVERRTSSKKRG

TrEMBL top hitse value%identityAlignment
A0A1S3B5H2 exosome complex component RRP4 homolog isoform X14.2e-16088.38Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+ LNHTQKIRL+RA+ERL+SLSSK NSDASV+VADTIPLNYEDGVLKGHGTLDL+G+VVA+ICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLL V PYL+KRRKQHFHHL+
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDPKED +IED V+K EQK  KFEGT      + VYTPLETRQNICRTANAIRVLS LGFI+TVE+IMEIV+LSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV

Query:  HEMLGAEFCVLTVEKEVERRTSSKKRG
        HEMLG+EFCVLT EKEVERR+SSKKRG
Subjt:  HEMLGAEFCVLTVEKEVERRTSSKKRG

A0A6J1EXY1 exosome complex component RRP4 homolog2.3e-16690.77Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+ LN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL+G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTA+DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQLLTV PYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDM++ED +NKSEQKGSKFEG+FGNQV+ER+YTPLETRQNICRTANAIRVLSILGFI++VE+IME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV

Query:  HEMLGAEFCVLTVEKEVERRTSSKK
        HEMLG+EFCVLT EKE ERRTSSKK
Subjt:  HEMLGAEFCVLTVEKEVERRTSSKK

A0A6J1HGD9 exosome complex component RRP4 homolog isoform X16.6e-16691.44Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQI LN TQKIRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDL+G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE
        EVAPKRWRL+INYSQDAVLMLSSMNLPDGIQRRRTA+DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQLLTV PYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV
        QYGIDLI GCNGFIWIGEHVDP EDM+IEDQVNKSEQKGSKFEGTFGNQV+ERVYTPLETRQNICRTANAIRVLS LGFI+TVE+IME VSLS S+NI+V
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV

Query:  HEMLGAEFCVLTVEKEVERRTSSKKRG
        HEMLG+EFCVLT EKE ERRTSSKKRG
Subjt:  HEMLGAEFCVLTVEKEVERRTSSKKRG

A0A6J1HVC7 exosome complex component RRP4 homolog isoform X11.3e-16189.6Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQI LN TQ+IRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDL+G+VVATICGVVER+NKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE
        EVAPKRWRL+INYSQDAVLMLSSMNLPDGIQRR+TA DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGK+ERGQLLTV PYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV
        QYGIDLI GCNGFI IGE VDP EDM+IEDQVNKSEQKGSKFEGTFGNQV+ERVYTPLETRQNICRTANAIRVLS LGFI+TVE+IME VSLS+S+NI+V
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV

Query:  HEMLGAEFCVLTVEKEVERRTSSKKRG
        HEMLG+EFCVLT EKE ERRTSSKKRG
Subjt:  HEMLGAEFCVLTVEKEVERRTSSKKRG

A0A6J1K7S0 exosome complex component RRP4 homolog3.5e-16790.83Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+ LN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL G+VVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTA+DELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQLLTV PYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDM++ED +NKSEQKGSKFEG+FGNQV+ER+YTPLETRQNICRTANAIRVLSILGFI++VE+IME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDV

Query:  HEMLGAEFCVLTVEKEVERRTSSKKRG
        HEMLG+EFCVLT EKE ERRTSSKKRG
Subjt:  HEMLGAEFCVLTVEKEVERRTSSKKRG

SwissProt top hitse value%identityAlignment
Q09704 Exosome complex component rrp47.8e-4742.02Show/hide
Query:  LKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEEND
        ++GHGT   DG + A++ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++DI   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D
Subjt:  LKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEEND

Query:  VICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQ
        ++ AEV+    DG + +  RS KYGKL  G  L VPP LV R K H + L   G+D+IL  NG++W+ +H + +   +    + + E++ S  E  + N+
Subjt:  VICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQ

Query:  VEE-RVYTPLE-TRQNICRTANAIRVL-----SILGFIITVELIMEIVSLSISMNID
         +E   YT L  +R +IC    A R L     SI  F  +  +   +  L++  N+D
Subjt:  VEE-RVYTPLE-TRQNICRTANAIRVL-----SILGFIITVELIMEIVSLSISMNID

Q13868 Exosome complex component RRP41.9e-4549.53Show/hide
Query:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN
        ++RL  AR+ L     +      V+  DTI    + G ++GHGT   +  ++A++ G VERVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N
Subjt:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN

Query:  YSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCN
           D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ V P LVKR+K HFH L   G  +ILG N
Subjt:  YSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCN

Query:  GFIWIGEHVDPKED
        GFIWI    + KE+
Subjt:  GFIWIGEHVDPKED

Q2KID0 Exosome complex component RRP42.3e-4649.53Show/hide
Query:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN
        ++RL  AR+ L     + +    V+  DTI    + G ++GHGT   +  ++A++ G VERVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N
Subjt:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN

Query:  YSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCN
           D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ V P LVKR+K HFH L   G  +ILG N
Subjt:  YSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCN

Query:  GFIWIGEHVDPKED
        GFIW+    + KED
Subjt:  GFIWIGEHVDPKED

Q8VBV3 Exosome complex component RRP43.9e-4650.23Show/hide
Query:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN
        ++RL +AR+ L     + +    V+  DTI    + G ++GHGT   +  ++A++ G VERVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N
Subjt:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN

Query:  YSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCN
           D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G L+ V P LVKR+K HFH L   G  +ILG N
Subjt:  YSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCN

Query:  GFIWI---GEHVD
        GFIWI    EH D
Subjt:  GFIWI---GEHVD

Q9ZVT7 Exosome complex component RRP4 homolog1.2e-11966.06Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQ+PL+ TQK+R +RA ERL+SLSS ANSDASVIV D+IP+N++D  LKGHGT ++DG+++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV 
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHL
        EVA KRWR+++N++QD VLMLSSMN+PDGIQRRRT++DELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+GQLL V PYLVKR K HFH++
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNID
        E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ ++ E   S   G      +E+ + PLETRQ ICR  NAIRVLS LGF +T+E+IME V+LS S NID
Subjt:  EQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNID

Query:  VHEMLGAEFCVLTVEKEVERRTSSKKR
        +H+MLG+EF V+  E E ERR + +K+
Subjt:  VHEMLGAEFCVLTVEKEVERRTSSKKR

Arabidopsis top hitse value%identityAlignment
AT1G03360.1 ribosomal RNA processing 48.4e-12166.06Show/hide
Query:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQ+PL+ TQK+R +RA ERL+SLSS ANSDASVIV D+IP+N++D  LKGHGT ++DG+++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV 
Subjt:  MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHL
        EVA KRWR+++N++QD VLMLSSMN+PDGIQRRRT++DELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+GQLL V PYLVKR K HFH++
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNID
        E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ ++ E   S   G      +E+ + PLETRQ ICR  NAIRVLS LGF +T+E+IME V+LS S NID
Subjt:  EQYGIDLILGCNGFIWIGEHVDPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNID

Query:  VHEMLGAEFCVLTVEKEVERRTSSKKR
        +H+MLG+EF V+  E E ERR + +K+
Subjt:  VHEMLGAEFCVLTVEKEVERRTSSKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTTTACAGATTCCCTTGAATCATACCCAGAAGATTCGGCTTCAGAGAGCCCGAGAAAGGCTCGAATCTCTCTCTTCGAAGGCCAATTCTGATGCTTCTGTTAT
AGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGGATGGAGACGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAG
TCAATAAGCTTATCTATGTGCGTGCCTTACGTGCCAGATATAAACCGGAGGTTGGTGATATTGTTGTGGGACGTGTTACTGAGGTTGCTCCTAAACGTTGGAGATTGGAT
ATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAATCTGCCTGATGGTATTCAGAGGAGGCGAACTGCCATTGATGAACTCAACATGCGGAGCATTTTTGA
AGAAAATGATGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGCTGCTCACAG
TTCCACCATATCTAGTAAAGAGACGCAAACAACACTTTCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGCTTTATCTGGATTGGGGAGCATGTT
GATCCCAAAGAGGATATGATTATAGAGGATCAAGTTAATAAATCTGAGCAGAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGGAAGAAAGAGTATATACTCC
ATTAGAGACACGACAGAATATATGCAGAACTGCAAATGCGATTCGAGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAACTCATAATGGAGATAGTTAGTCTAAGCA
TTTCTATGAACATCGATGTGCATGAAATGCTCGGTGCAGAGTTCTGCGTTCTCACGGTGGAAAAAGAGGTCGAACGACGTACTTCGAGTAAGAAGAGGGGGTGA
mRNA sequenceShow/hide mRNA sequence
AAGAAACCTACTAAAGCGTCAGCGTCTTCTTCCTTTCCCTCTCCTTCACACAGCCGTCGCTCCCCTTGCTCAGTCTCCTTCTCCGGTGAGCCTCCGGCAGCCACAGGCGA
AAGCAGCGACGACTAGAGCCCACAGCCACTCGAACGCCCAGCTCTCTCGTCGACGGCGGCTTACGTTCACCCACAACTCTGACTTGCGACTCGAGCGCCCGTTCAAACGG
CTTCGCCCAGGCCTTTGCAGCATCGTTTCTTCTCCGTTCGAGACTCCGGCGCGAACAACAGGTTGTTCAACACGTTTTTGATGTCTATGTGGGTCTTGCAGCGGCGTTTC
TGATTTGGGGGTAAGTTTTCGACTGTTCCCCACACTCTGATTAGCCTCAAATCAGTTTACCCATAACATTTAAGGTTCAGACTTGCAAGTTCGGACATTTTCGAATACCA
ACCAGCAAGGTTTGGAGTCTTTTCAGTAAGATTTGACTTCGAGGAAGTTGAAGTGAGTTTTTGATTGAGAATTGTAGGATTGTGTGTCGAGGGGAAGATCAATATACAGC
GTACATAGCCAACTCAGAGTGTCAGTAGGGGGGACCGTGGACAAGTTGAAAGCTGTGATCAATTCTGATGGATTCCATAGGCAAAGGGGCAATTGGAAAACAAGTGATTA
ATAGACTCACTGATATTAAGGGAAAGGCAGCACCATGAGGGAGAAATGATCCATGGGCAACGTTTTTGTAGTCTATGCATAGTGTTCATGCAAGAGTTTGATATTTCCCA
CAATAGAAACTTAATTCTGTTGGGACAGGGGCAGTTCCAAATCTTCTTGTATAAGTCTTTGGCAATTGAGGGACTACGACTACTAGCGATATGAGAGGTTTACAGATTCC
CTTGAATCATACCCAGAAGATTCGGCTTCAGAGAGCCCGAGAAAGGCTCGAATCTCTCTCTTCGAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTC
TCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGGATGGAGACGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTG
CGTGCCTTACGTGCCAGATATAAACCGGAGGTTGGTGATATTGTTGTGGGACGTGTTACTGAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGC
AGTTTTGATGCTTTCTTCGATGAATCTGCCTGATGGTATTCAGAGGAGGCGAACTGCCATTGATGAACTCAACATGCGGAGCATTTTTGAAGAAAATGATGTCATTTGTG
CCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGCTGCTCACAGTTCCACCATATCTAGTAAAG
AGACGCAAACAACACTTTCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGCTTTATCTGGATTGGGGAGCATGTTGATCCCAAAGAGGATATGAT
TATAGAGGATCAAGTTAATAAATCTGAGCAGAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGGAAGAAAGAGTATATACTCCATTAGAGACACGACAGAATA
TATGCAGAACTGCAAATGCGATTCGAGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAACTCATAATGGAGATAGTTAGTCTAAGCATTTCTATGAACATCGATGTG
CATGAAATGCTCGGTGCAGAGTTCTGCGTTCTCACGGTGGAAAAAGAGGTCGAACGACGTACTTCGAGTAAGAAGAGGGGGTGATTGCATTTTCTTTCAAAAATCGTGAG
TAATTTGAATCACTCGTAATGATAATTTTGCATGAACCCTTTGATTTGCAGAGAAATTTAGTGTTAGAATATTTTGTAGAATTTTAGATTACCACCACTTGGTCTCTGTT
AGTATTGGCGAAACATAACTTTATTTAATGTAATATTTCTGCGGATGATTGTATCTTATGAAGATCGTGCATCTTCGTTGCTTGAAGGCAATTTTTGGTTTTTGATGGCT
TGC
Protein sequenceShow/hide protein sequence
MRGLQIPLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLDGDVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD
INYSQDAVLMLSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV
DPKEDMIIEDQVNKSEQKGSKFEGTFGNQVEERVYTPLETRQNICRTANAIRVLSILGFIITVELIMEIVSLSISMNIDVHEMLGAEFCVLTVEKEVERRTSSKKRG