; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G017450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G017450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationchr01:16258577..16260689
RNA-Seq ExpressionLsi01G017450
SyntenyLsi01G017450
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013851.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]4.8e-6388.05Show/hide
Query:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE
        MAFLLCSNPLS SLHS  FSPS  PSPSPSCFPA  A L+SMLLMKPTGFQPKHFNGVRLRNPSFVENTVS +VKA SEID TGETDS+E +P AEAKKE
Subjt:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]1.1e-6288.05Show/hide
Query:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE
        MAFLLCSNPLSTSL+S  FSPS  PSPSPSCFP TSAA SS+LLM+P GFQPK FNGVRLRN SFVENT SL+VKA SEIDGTGETDS+E QPPAEAKKE
Subjt:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DVPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022949869.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]5.4e-6789.94Show/hide
Query:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE
        MAFLLCSNPLS SLHS  FSPSP+PSPSPSCFPA  AAL+SMLLMKPTGFQPKHFNGVRLRNPSFVENTVS +VKA SEID TGETDS+E +PPAEAKKE
Subjt:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]3.5e-6689.31Show/hide
Query:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE
        MAFLLCSNPLS SLHS  FSPSP+PSPSPSCFP   AAL+SMLLMKPTGFQPKHFNGVRLRNPSFVENTVS  VKA SEID TGETDS+E +P AEAKKE
Subjt:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]9.6e-6489.24Show/hide
Query:  AFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKED
        +FLLCSNPLSTSLHSF F  SP PSPSPSCFPATSAA S MLLMKP GFQPKHFNGVRL  PSFVEN  SL+VKA SEID  G+TDSSESQPPAEAKKED
Subjt:  AFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein1.4e-5784.18Show/hide
Query:  AFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKED
        +FLL SNPLSTS H        + SPSPSCFP TSA  SSMLLMKP GFQPKHFNGVRLRN SFVENT SLVVKA SE D TGETDSS+ QP AEAKKED
Subjt:  AFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic3.3e-5481.01Show/hide
Query:  AFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKED
        +FLLCSNPLSTS H     P         CFP TSA  SSMLLMKP GFQPK FNGVRLRN  FVENT SLVVKA SE D TGE DSSE QP AEAKKED
Subjt:  AFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic5.1e-6388.05Show/hide
Query:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE
        MAFLLCSNPLSTSL+S  FSPS  PSPSPSCFP TSAA SS+LLM+P GFQPK FNGVRLRN SFVENT SL+VKA SEIDGTGETDS+E QPPAEAKKE
Subjt:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DVPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like2.6e-6789.94Show/hide
Query:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE
        MAFLLCSNPLS SLHS  FSPSP+PSPSPSCFPA  AAL+SMLLMKPTGFQPKHFNGVRLRNPSFVENTVS +VKA SEID TGETDS+E +PPAEAKKE
Subjt:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like1.5e-6286.79Show/hide
Query:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE
        MAFLLCSNPLS SLHS   SPS  PSPSPSCFP   +AL+SM LMKPTGFQPKHFNGVRLRNPSFVENTVS +VKA SEID TGETDS+E +P AEAKKE
Subjt:  MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic2.1e-1341.14Show/hide
Query:  LLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKED--
        LLC N  +T+  +   S  P P+ +P         +S + +  PT        G R+  P   +   + +   ++      +++ ++    +E+KKE   
Subjt:  LLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKED--

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        V VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic6.1e-1343.62Show/hide
Query:  LFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVS----LVVK---AVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLE
        L SP  + S  P   P TS A+SS      + F  K  N      PSF +  V+    +  K    V+ +    E  + E    ++ ++ ++ V  LPLE
Subjt:  LFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVS----LVVK---AVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLE

Query:  SKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        SKLQ +LEQK +MK+AKKIRLRR RL++KR LRK+G WPPSKMKKLKNV
Subjt:  SKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic1.9e-1449.38Show/hide
Query:  LLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVK-AVSEIDGTGETDSSESQPPAEAKKEDV
        LLC N L  SL S   S S     SPS         S +L +KP   + K  N V L   S   +   +VVK A S +DG  E +S E      A    V
Subjt:  LLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVK-AVSEIDGTGETDSSESQPPAEAKKEDV

Query:  PVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  PVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 51.4e-1549.38Show/hide
Query:  LLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVK-AVSEIDGTGETDSSESQPPAEAKKEDV
        LLC N L  SL S   S S     SPS         S +L +KP   + K  N V L   S   +   +VVK A S +DG  E +S E      A    V
Subjt:  LLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVK-AVSEIDGTGETDSSESQPPAEAKKEDV

Query:  PVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  PVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCTCTTTTCTCCGTCGCCGACGCCGTCGCCATCGCCGTCATGTTTTCCAGCGACTTCTGC
CGCCTTGAGTTCTATGTTGCTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCCCTCTTTTGTTGAAAATACAGTGTCGTTAGTTG
TCAAAGCTGTGTCTGAGATTGATGGTACGGGAGAAACTGACAGTAGTGAATCGCAGCCGCCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAA
TCAAAGTTACAAGAGAGGCTGGAGCAGAAGGCGAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGACG
ATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
AAAGGGGGTTCCCCAGACCAGAGAAAAACACCATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCTCTTTTCTCCGTCGCCGACGCCGTCG
CCATCGCCGTCATGTTTTCCAGCGACTTCTGCCGCCTTGAGTTCTATGTTGCTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGAGTCCGACTTCGAAACCC
CTCTTTTGTTGAAAATACAGTGTCGTTAGTTGTCAAAGCTGTGTCTGAGATTGATGGTACGGGAGAAACTGACAGTAGTGAATCGCAGCCGCCTGCAGAAGCTAAAAAGG
AGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAGCAGAAGGCGAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGGCTT
GTTCAGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCTTTAGCTCCTTCAATTCAATTCTTGCAGATTTA
GAGGTGACCCCATTTCTCCTCATTGCTTCCAATTTACTCTGTCTAATTTCTCTATACTTTCAAGGAAATGTGCTTGCTTCTTTATATATCTGAAAGAATACAGTGAGTAA
TGAAATGTGCAAATTGTGCTTAGTTTTGAATGACTAATTGTGAGTTGAAAGATAACTGTACAGTTCAGCAAACCGAGTACTTGATTTAGATTTTTATCAGTAGCTCCTGG
ATCTCTTGAAACATTCATCTGCCCATCATATATAACTTGCTAAAAAACCTTGCACAAAGGCATTATCCTAGGAACTTAGACGAAGATGAAGTTGGTACATAAGAGGCTTT
TGTTCCTTTTGAATGTACTAAAGATGTATTATTGTCTCTCATTTCTTTTCCAAATAAAATGAAAAGGCACGTCGAGATCAATGCCCCCATCGAGGGAGGAGTTTAAGCTC
GACTCGTCTGTCTTAATTTGTCTCTGACTGGTTGAATAGAGATGAAAACTAGGGGGAATATACAGTTCAACAAACAAAGAGTTCTGGTTTTTGATGCAG
Protein sequenceShow/hide protein sequence
MAFLLCSNPLSTSLHSFLFSPSPTPSPSPSCFPATSAALSSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSLVVKAVSEIDGTGETDSSESQPPAEAKKEDVPVDKLPLE
SKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV