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Lsi01G017650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G017650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionIntegrase
Genome locationchr01:16528436..16528828
RNA-Seq ExpressionLsi01G017650
SyntenyLsi01G017650
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032729.1 integrase [Cucumis melo var. makuwa]6.0e-4071.32Show/hide
Query:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM--IHK
        MQTSF G SR RRGG GR+GG RNYDNRS  NSEN QESS  SRGRG  RG+GFG+NQG GR NFS IQCFN +KYGH QADCWA +NG  N+TM  +HK
Subjt:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM--IHK

Query:  -KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT
         + KNDEG+L L  S QD VVEPT YLDSGCSNHMT
Subjt:  -KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT

KAA0052790.1 integrase [Cucumis melo var. makuwa]1.8e-3972.59Show/hide
Query:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQE--SSSRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-
        MQTSF G SR RRGG GR+GG RNYDNRS  NSEN QE  S SRGRG  RGKGFGRNQG GR NFS IQCFN  KYGH QADCWA +NG  N+TM +HK 
Subjt:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQE--SSSRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-

Query:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT
        + KN+EG+L LA S QD VVEPT YLDSGCSNHMT
Subjt:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT

KAA0063962.1 integrase [Cucumis melo var. makuwa]1.0e-3971.85Show/hide
Query:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRG-DRGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-
        MQTSF G SR RR G GRQGG RNYDNRS  NSEN QESS  S+GRG +RG+GFGRNQG GR NFS IQCFN +KYGH QADCWA +NG  N+TM +HK 
Subjt:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRG-DRGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-

Query:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT
        + KNDEG+L L  S QD VVEPT YLDSGCSNHMT
Subjt:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT

TYJ95504.1 integrase [Cucumis melo var. makuwa]3.9e-3971.85Show/hide
Query:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHKK
        MQTSF G SR RRGG GR+GG RNYDNRS  NSEN QESS  SRGRG  RG+GFGRNQG GR NFS IQCFN  KYGH QA+CWA +NG  N+TM +HK+
Subjt:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHKK

Query:  GKN-DEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT
         K  DEG+L LA S QD VVEPT YLDSGCSNHMT
Subjt:  GKN-DEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT

TYK05177.1 integrase [Cucumis melo var. makuwa]1.0e-3971.85Show/hide
Query:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRG-DRGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-
        MQTSF G SR RR G GRQGG RNYDNRS  NSEN QESS  S+GRG +RG+GFGRNQG GR NFS IQCFN +KYGH QADCWA +NG  N+TM +HK 
Subjt:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRG-DRGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-

Query:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT
        + KNDEG+L L  S QD VVEPT YLDSGCSNHMT
Subjt:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT

TrEMBL top hitse value%identityAlignment
A0A5A7SKA6 Integrase1.9e-3971.85Show/hide
Query:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-
        MQTSF G SR RRGGRGR+GG RNYDNR   N EN QE+S  SRGRG  RG+GFGRNQG GR NFSHIQCFN +KYGH  ADCW  +NGD N+TM +HK 
Subjt:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-

Query:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT
        + KNDEG+L LA S QD VVEPT YLDSGCSNHMT
Subjt:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT

A0A5A7SUA3 Integrase2.9e-4071.32Show/hide
Query:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM--IHK
        MQTSF G SR RRGG GR+GG RNYDNRS  NSEN QESS  SRGRG  RG+GFG+NQG GR NFS IQCFN +KYGH QADCWA +NG  N+TM  +HK
Subjt:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM--IHK

Query:  -KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT
         + KNDEG+L L  S QD VVEPT YLDSGCSNHMT
Subjt:  -KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT

A0A5A7UC82 Integrase8.5e-4072.59Show/hide
Query:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQE--SSSRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-
        MQTSF G SR RRGG GR+GG RNYDNRS  NSEN QE  S SRGRG  RGKGFGRNQG GR NFS IQCFN  KYGH QADCWA +NG  N+TM +HK 
Subjt:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQE--SSSRGRGD-RGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-

Query:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT
        + KN+EG+L LA S QD VVEPT YLDSGCSNHMT
Subjt:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT

A0A5A7V6M1 Integrase5.0e-4071.85Show/hide
Query:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRG-DRGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-
        MQTSF G SR RR G GRQGG RNYDNRS  NSEN QESS  S+GRG +RG+GFGRNQG GR NFS IQCFN +KYGH QADCWA +NG  N+TM +HK 
Subjt:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRG-DRGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-

Query:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT
        + KNDEG+L L  S QD VVEPT YLDSGCSNHMT
Subjt:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT

A0A5D3C044 Integrase5.0e-4071.85Show/hide
Query:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRG-DRGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-
        MQTSF G SR RR G GRQGG RNYDNRS  NSEN QESS  S+GRG +RG+GFGRNQG GR NFS IQCFN +KYGH QADCWA +NG  N+TM +HK 
Subjt:  MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESS--SRGRG-DRGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTM-IHK-

Query:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT
        + KNDEG+L L  S QD VVEPT YLDSGCSNHMT
Subjt:  KGKNDEGVLSLAYSDQDGVVEPTRYLDSGCSNHMT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTTCATTTGTTGGTAGTTCTCGTGAAAGACGTGGTGGTCGTGGCAGACAAGGAGGTAAAAGAAACTATGATAATAGGAGTGATGTGAATTCAGAAAATCAACA
AGAAAGTTCATCTCGAGGTAGAGGAGACAGAGGAAAAGGCTTTGGTAGAAACCAAGGAAGTGGTCGTGATAATTTTTCTCACATTCAATGTTTTAACTACAAAAAGTATG
GTCATATTCAGGCAGATTGCTGGGCACCAAGAAATGGAGATGAAAATTCCACAATGATACATAAAAAGGGGAAAAATGATGAAGGTGTTCTATCTCTTGCATATAGTGAT
CAAGACGGTGTTGTGGAGCCTACACGGTATCTTGATAGTGGTTGTAGTAACCACATGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAACTTCATTTGTTGGTAGTTCTCGTGAAAGACGTGGTGGTCGTGGCAGACAAGGAGGTAAAAGAAACTATGATAATAGGAGTGATGTGAATTCAGAAAATCAACA
AGAAAGTTCATCTCGAGGTAGAGGAGACAGAGGAAAAGGCTTTGGTAGAAACCAAGGAAGTGGTCGTGATAATTTTTCTCACATTCAATGTTTTAACTACAAAAAGTATG
GTCATATTCAGGCAGATTGCTGGGCACCAAGAAATGGAGATGAAAATTCCACAATGATACATAAAAAGGGGAAAAATGATGAAGGTGTTCTATCTCTTGCATATAGTGAT
CAAGACGGTGTTGTGGAGCCTACACGGTATCTTGATAGTGGTTGTAGTAACCACATGACATGA
Protein sequenceShow/hide protein sequence
MQTSFVGSSRERRGGRGRQGGKRNYDNRSDVNSENQQESSSRGRGDRGKGFGRNQGSGRDNFSHIQCFNYKKYGHIQADCWAPRNGDENSTMIHKKGKNDEGVLSLAYSD
QDGVVEPTRYLDSGCSNHMT