CuGenDBv2

Gene ID	Lsi01G017790
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	sigma factor binding protein 2, chloroplastic
Genome location	chr01:17030559..17031056
RNA-Seq Expression	Lsi01G017790
Synteny	Lsi01G017790
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025974.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]

1.8e-57

76.65

Show/hide

Query:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD
        MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    
Subjt:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD

Query:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
        DDDGASNL++NSNNPSL  ++P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Subjt:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

KAE8649682.1 hypothetical protein Csa_012221 [Cucumis sativus]

1.0e-55

74.85

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Query:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD
        MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     
Subjt:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD

Query:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
        +DDGA+NL++NSNN SL  E+P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Subjt:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

TYK04210.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]

6.9e-57

76.05

Show/hide

Query:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD
        MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK P SAV   AAS+D L+NT SG    
Subjt:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD

Query:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
        DDDGASNL++NSNNPSL  ++P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Subjt:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

XP_008455708.1 PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]

1.8e-57

76.65

Show/hide

Query:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD
        MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    
Subjt:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD

Query:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
        DDDGASNL++NSNNPSL  ++P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Subjt:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

XP_038882812.1 sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]

7.4e-67

85.45

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Query:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDD
        M+AGA TGNNHRILDAV+R KPTKKTKQPNKKKPIKVVYISNPMKVQTSAS+FMALVQELTG+DADFPDPSKF  SAV GGAASSDLLHNTASG   DD+
Subjt:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDD

Query:  DGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
         GASNL+MN+NN SLAVELP +DD LGSFY+DF+DLIFPPPVIGNFSGLLPAAA  AVVYESYAR
Subjt:  DGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3J8 VQ domain-containing protein

4.8e-56

74.85

Show/hide

Query:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD
        MDAG  TG++HR LDAV+R KPTKKTKQP    KKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFP SAV  GAAS+D L+NT S     
Subjt:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD

Query:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
        +DDGA+NL++NSNN SL  E+P EDD LGSFY+DF+DLIFP PVIGNFSGLLP A   AVVYES AR
Subjt:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

A0A1S3C276 sigma factor binding protein 2, chloroplastic

8.8e-58

76.65

Show/hide

Query:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD
        MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    
Subjt:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD

Query:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
        DDDGASNL++NSNNPSL  ++P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Subjt:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

A0A5A7SJV9 Sigma factor binding protein 2

8.8e-58

76.65

Show/hide

Query:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD
        MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFP SAV   AAS+D L+NT SG    
Subjt:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD

Query:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
        DDDGASNL++NSNNPSL  ++P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Subjt:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

A0A5D3BYM2 Sigma factor binding protein 2

3.3e-57

76.05

Show/hide

Query:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD
        MDAGA TGNN R LDAV+R KP KKTKQ NK  KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK P SAV   AAS+D L+NT SG    
Subjt:  MDAGAGTGNNHRILDAVHRCKPTKKTKQPNK--KKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDD

Query:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
        DDDGASNL++NSNNPSL  ++P EDD LGSFY+DF+DLIFPPPV+GN SGLLP     AVVYES AR
Subjt:  DDDGASNLMMNSNNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like

3.8e-53

70.73

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Query:  AGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDG
        AG GTGN+HR+LD VHR KPTKKTKQPNK KPIKVVYISNPMKVQ SAS FMALVQ+LTGQDADFPDPS FP +AV   AA  D +HNT +  +      
Subjt:  AGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDG

Query:  ASNLMMNSNNPSLAVELPEEDD-FLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR
            +MN+NNPSL VE+P EDD FLGSFY+D +DLIFPPPVIGN+  LLPAAA TAV+YESYAR
Subjt:  ASNLMMNSNNPSLAVELPEEDD-FLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

SwissProt top hits

e value

%identity

Alignment

O80669 Sigma factor binding protein 2, chloroplastic

1.8e-07

48.57

Show/hide

Query:  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAV
        N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA    PS    +AV
Subjt:  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAV

Q9LDH1 Sigma factor binding protein 1, chloroplastic

4.7e-08

47.78

Show/hide

Query:  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPSSAVFGGAASSD-----LLHNTASGRDDDD
        V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   PSS     +  ++     +LH    G  D D
Subjt:  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPSSAVFGGAASSD-----LLHNTASGRDDDD

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

1.3e-08

48.57

Show/hide

Query:  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAV
        N  +   +  R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQDA    PS    +AV
Subjt:  NNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAV

AT3G56710.1 sigma factor binding protein 1

3.4e-09

47.78

Show/hide

Query:  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPSSAVFGGAASSD-----LLHNTASGRDDDD
        V R  P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   PSS     +  ++     +LH    G  D D
Subjt:  VHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPSSAVFGGAASSD-----LLHNTASGRDDDD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACGCCGGCGCCGGCACCGGAAACAACCACAGAATCCTCGATGCCGTTCACCGGTGTAAACCCACAAAGAAAACGAAGCAACCCAACAAAAAGAAACCCATCAAAGT
TGTGTACATATCTAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCCGACCCCTCTAAATTCC
CCTCCTCCGCCGTCTTCGGCGGCGCCGCCTCCTCCGACCTCCTCCACAACACCGCATCCGGCCGCGACGACGACGACGACGACGGTGCTAGTAATCTTATGATGAATAGT
AACAACCCTTCACTTGCTGTTGAGCTGCCGGAGGAGGACGACTTTCTTGGTAGTTTTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTAATCGGAAACTTCTC
TGGGTTGCTTCCGGCGGCGGCGACGACGGCGGTTGTCTATGAATCTTATGCAAGGTGA

mRNA sequence

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Protein sequence

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MDAGAGTGNNHRILDAVHRCKPTKKTKQPNKKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPSSAVFGGAASSDLLHNTASGRDDDDDDGASNLMMNS
NNPSLAVELPEEDDFLGSFYNDFEDLIFPPPVIGNFSGLLPAAATTAVVYESYAR

Lsi01G017790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome