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Lsi01G017870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G017870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor ORG2
Genome locationchr01:17286306..17287388
RNA-Seq ExpressionLsi01G017870
SyntenyLsi01G017870
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR015660 - Achaete-scute transcription factor-related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN64266.1 hypothetical protein VITISV_031510 [Vitis vinifera]2.6e-1250.41Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI
        Y S+ S +   D   K+LS P+TVS  LKYIP LQKQVE L+ KK +L+ S I+R          R+   +SSL AVS N LS+RE+VVQI STF  H  
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI

Query:  PLSWILLGLHDDGLHPLNISS
        PLS +LL L +DGL  +N SS
Subjt:  PLSWILLGLHDDGLHPLNISS

KAB5551685.1 hypothetical protein DKX38_008996 [Salix brachista]2.9e-1147.5Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMI---------TRRQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGIP
        Y S+ S +   D  +K+LS PATVS ALKY+  LQ+QVE LV +K +L+  +           +R++  +SSLL+VS + LS+REVVV I ST+  H IP
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMI---------TRRQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGIP

Query:  LSWILLGLHDDGLHPLNISS
        LS ILL L +DGL   N SS
Subjt:  LSWILLGLHDDGLHPLNISS

XP_010653965.1 PREDICTED: transcription factor ORG2 [Vitis vinifera]2.6e-1250.41Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI
        Y S+ S +   D   K+LS P+TVS  LKYIP LQKQVE L+ KK +L+ S I+R          R+   +SSL AVS N LS+RE+VVQI STF  H  
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI

Query:  PLSWILLGLHDDGLHPLNISS
        PLS +LL L +DGL  +N SS
Subjt:  PLSWILLGLHDDGLHPLNISS

XP_034693284.1 transcription factor ORG2-like [Vitis riparia]1.7e-1149.59Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI
        Y S+ S +   D   K+LS P+TVS  LKYIP LQ+QVE L+ KK +L+ S I+R          R+   +SSL AVS N LS+RE+VVQI STF  H  
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI

Query:  PLSWILLGLHDDGLHPLNISS
        PLS +LL L +DGL  +N SS
Subjt:  PLSWILLGLHDDGLHPLNISS

XP_038882376.1 transcription factor ORG2-like [Benincasa hispida]2.5e-3183.84Show/hide
Query:  DLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRR-QEESSSSLLAVSTNGLSEREVVVQIVSTFHGIPLSWILLGLHDDGLHPLNISSS
        D  KRLSNPATVSVAL YI NLQKQVEELV+KK+QLM SMITRR QEESSSSLLAVSTN LSE E +VQI+STFHGIPLS ILLGL +DGLHPLNISSS
Subjt:  DLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRR-QEESSSSLLAVSTNGLSEREVVVQIVSTFHGIPLSWILLGLHDDGLHPLNISSS

TrEMBL top hitse value%identityAlignment
A0A438I684 Transcription factor ORG21.3e-1250.41Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI
        Y S+ S +   D   K+LS P+TVS  LKYIP LQKQVE L+ KK +L+ S I+R          R+   +SSL AVS N LS+RE+VVQI STF  H  
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI

Query:  PLSWILLGLHDDGLHPLNISS
        PLS +LL L +DGL  +N SS
Subjt:  PLSWILLGLHDDGLHPLNISS

A0A5N5M9E3 BHLH domain-containing protein1.4e-1147.5Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMI---------TRRQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGIP
        Y S+ S +   D  +K+LS PATVS ALKY+  LQ+QVE LV +K +L+  +           +R++  +SSLL+VS + LS+REVVV I ST+  H IP
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMI---------TRRQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGIP

Query:  LSWILLGLHDDGLHPLNISS
        LS ILL L +DGL   N SS
Subjt:  LSWILLGLHDDGLHPLNISS

A5C6G0 BHLH domain-containing protein1.3e-1250.41Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI
        Y S+ S +   D   K+LS P+TVS  LKYIP LQKQVE L+ KK +L+ S I+R          R+   +SSL AVS N LS+RE+VVQI STF  H  
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI

Query:  PLSWILLGLHDDGLHPLNISS
        PLS +LL L +DGL  +N SS
Subjt:  PLSWILLGLHDDGLHPLNISS

D7TIN8 BHLH domain-containing protein1.3e-1250.41Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI
        Y S+ S +   D   K+LS P+TVS  LKYIP LQKQVE L+ KK +L+ S I+R          R+   +SSL AVS N LS+RE+VVQI STF  H  
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI

Query:  PLSWILLGLHDDGLHPLNISS
        PLS +LL L +DGL  +N SS
Subjt:  PLSWILLGLHDDGLHPLNISS

F6HBH6 BHLH domain-containing protein1.8e-1147.93Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI
        Y S+ S +   D  +K+LS P+TVS  LKYIP LQ+QVE L+ KK + + S I+R          R     SSL AVS   LS+RE+VVQI STF  H  
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR----------RQEESSSSLLAVSTNGLSEREVVVQIVSTF--HGI

Query:  PLSWILLGLHDDGLHPLNISS
        PLS +LL L +DGL  +N SS
Subjt:  PLSWILLGLHDDGLHPLNISS

SwissProt top hitse value%identityAlignment
A2WZ60 Protein IRON-RELATED TRANSCRIPTION FACTOR 22.7e-0737.19Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR-------RQEESSSSLLAVSTNGLSEREVVVQI--VSTFHG--IP
        Y S+ + + D D   K+LS P TVS  LKYIP LQKQVE L  KK++L  +  T         Q  S      VS   +++ E++VQ+  +S   G  +P
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR-------RQEESSSSLLAVSTNGLSEREVVVQI--VSTFHG--IP

Query:  LSWILLGLHDDGLHPLNISSS
        LS  +  L ++GLH ++ S+S
Subjt:  LSWILLGLHDDGLHPLNISSS

Q0JFZ0 Protein IRON-RELATED TRANSCRIPTION FACTOR 21.3e-0636.36Show/hide
Query:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR-------RQEESSSSLLAVSTNGLSEREVVVQI--VSTFHG--IP
        Y S+ + + D D    +LS P TVS  LKYIP LQKQVE L  KK++L  +  T         Q  S      VS   +++ E++VQ+  +S   G  +P
Subjt:  YKSIPSTIGDVDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITR-------RQEESSSSLLAVSTNGLSEREVVVQI--VSTFHG--IP

Query:  LSWILLGLHDDGLHPLNISSS
        LS  +  L ++GLH ++ S+S
Subjt:  LSWILLGLHDDGLHPLNISSS

Q9M1K0 Transcription factor ORG31.4e-0839.05Show/hide
Query:  KRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRRQEES---------SSSLLAVSTNGLSEREVVVQIVST-FHGIPLSWILLGLHDDGLHPL
        K+LS PATVS +LKYIP LQ+QV++L+ KK +L+  +  +R  E          ++ +  VS   L + EV+VQI S+  H   +S +L GL +D    +
Subjt:  KRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRRQEES---------SSSLLAVSTNGLSEREVVVQIVST-FHGIPLSWILLGLHDDGLHPL

Query:  NISSS
        ++SSS
Subjt:  NISSS

Q9M1K1 Transcription factor ORG22.2e-0937.96Show/hide
Query:  DLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLM--------FSMITRRQEESSSSLLA-VSTNGLSEREVVVQIVST-FHGIPLSWILLGLHDDGL
        D  K+LS P TVS +LKYIP LQ+QV+ L+ KK +++        F +  ++Q ++ +S L+ VS   L + EV+VQ+ S+  H   +S +L G+ +DG 
Subjt:  DLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLM--------FSMITRRQEESSSSLLA-VSTNGLSEREVVVQIVST-FHGIPLSWILLGLHDDGL

Query:  HPLNISSS
          +++SSS
Subjt:  HPLNISSS

Q9ZVB5 Transcription factor bHLH1003.5e-0741.12Show/hide
Query:  KRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRR-----------QEESSSSLLAVSTNGLSEREVVVQIVS-TFHGIPLSWILLGLHDDGLH
        K+LS  ATVS ALKYIP LQ+QV++L+ KK +L F +  +R           +E  +S    VS+  LSE EV+VQI S          +L G+ +DGL 
Subjt:  KRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRR-----------QEESSSSLLAVSTNGLSEREVVVQIVS-TFHGIPLSWILLGLHDDGLH

Query:  PLNISSS
         +  SSS
Subjt:  PLNISSS

Arabidopsis top hitse value%identityAlignment
AT2G41240.1 basic helix-loop-helix protein 1002.5e-0841.12Show/hide
Query:  KRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRR-----------QEESSSSLLAVSTNGLSEREVVVQIVS-TFHGIPLSWILLGLHDDGLH
        K+LS  ATVS ALKYIP LQ+QV++L+ KK +L F +  +R           +E  +S    VS+  LSE EV+VQI S          +L G+ +DGL 
Subjt:  KRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRR-----------QEESSSSLLAVSTNGLSEREVVVQIVS-TFHGIPLSWILLGLHDDGLH

Query:  PLNISSS
         +  SSS
Subjt:  PLNISSS

AT2G41240.2 basic helix-loop-helix protein 1009.4e-0840.57Show/hide
Query:  RLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRR-----------QEESSSSLLAVSTNGLSEREVVVQIVS-TFHGIPLSWILLGLHDDGLHP
        +LS  ATVS ALKYIP LQ+QV++L+ KK +L F +  +R           +E  +S    VS+  LSE EV+VQI S          +L G+ +DGL  
Subjt:  RLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRR-----------QEESSSSLLAVSTNGLSEREVVVQIVS-TFHGIPLSWILLGLHDDGLHP

Query:  LNISSS
        +  SSS
Subjt:  LNISSS

AT3G56970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.5e-1037.96Show/hide
Query:  DLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLM--------FSMITRRQEESSSSLLA-VSTNGLSEREVVVQIVST-FHGIPLSWILLGLHDDGL
        D  K+LS P TVS +LKYIP LQ+QV+ L+ KK +++        F +  ++Q ++ +S L+ VS   L + EV+VQ+ S+  H   +S +L G+ +DG 
Subjt:  DLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLM--------FSMITRRQEESSSSLLA-VSTNGLSEREVVVQIVST-FHGIPLSWILLGLHDDGL

Query:  HPLNISSS
          +++SSS
Subjt:  HPLNISSS

AT3G56980.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.0e-0939.05Show/hide
Query:  KRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRRQEES---------SSSLLAVSTNGLSEREVVVQIVST-FHGIPLSWILLGLHDDGLHPL
        K+LS PATVS +LKYIP LQ+QV++L+ KK +L+  +  +R  E          ++ +  VS   L + EV+VQI S+  H   +S +L GL +D    +
Subjt:  KRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRRQEES---------SSSLLAVSTNGLSEREVVVQIVST-FHGIPLSWILLGLHDDGLHPL

Query:  NISSS
        ++SSS
Subjt:  NISSS

AT5G04150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.1e-0529.73Show/hide
Query:  VDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRRQEE-----------SSSSLLAVSTNGLSEREVVVQIVSTFHGIPLSWILLGLHD
        + D  ++LS P TV+  +KYIP  +++++ L  +K +L+  +  +  +E            SSS   ++ N L++ E+ VQI +T     +S +LL L +
Subjt:  VDDLLKRLSNPATVSVALKYIPNLQKQVEELVDKKRQLMFSMITRRQEE-----------SSSSLLAVSTNGLSEREVVVQIVSTFHGIPLSWILLGLHD

Query:  DGLHPLNISSS
        +GL+ +++SSS
Subjt:  DGLHPLNISSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTATATATATGGCCACCATGTTCAATAACTTCTGTACACAAGAAATCAAACAAAGCAGCCATGTTAGCATTATCTTCTTCCTCTTCGTCTTCAAGATTGTTTCTAAGCAA
TAGAAAAGGGTGGCCATTTGGAGAGCTCTCTGAACAGAACTGCATGGACAAAGTGGCATCTGAAAACATTTGTGAGTCACCATTGTTTGATCTTCATTTTACTTCTCCAA
AGGAAGTTGGTTACAAGTCAATACCTTCAACCATTGGTGATGTTGATGATCTATTGAAGAGACTAAGCAATCCAGCAACAGTTTCAGTTGCACTAAAATACATACCAAAT
CTACAAAAGCAAGTGGAAGAACTTGTTGATAAGAAGAGGCAGCTTATGTTTTCGATGATTACGAGGAGACAAGAAGAAAGCAGCTCAAGCTTGTTGGCTGTCTCAACCAA
TGGCCTTAGTGAAAGAGAAGTTGTTGTCCAAATAGTTTCCACCTTTCATGGAATCCCTTTGTCTTGGATCTTGCTTGGTTTACATGATGATGGGCTTCACCCTCTCAATA
TTTCTTCATCT
mRNA sequenceShow/hide mRNA sequence
TTATATATATGGCCACCATGTTCAATAACTTCTGTACACAAGAAATCAAACAAAGCAGCCATGTTAGCATTATCTTCTTCCTCTTCGTCTTCAAGATTGTTTCTAAGCAA
TAGAAAAGGGTGGCCATTTGGAGAGCTCTCTGAACAGAACTGCATGGACAAAGTGGCATCTGAAAACATTTGTGAGTCACCATTGTTTGATCTTCATTTTACTTCTCCAA
AGGAAGTTGGTTACAAGTCAATACCTTCAACCATTGGTGATGTTGATGATCTATTGAAGAGACTAAGCAATCCAGCAACAGTTTCAGTTGCACTAAAATACATACCAAAT
CTACAAAAGCAAGTGGAAGAACTTGTTGATAAGAAGAGGCAGCTTATGTTTTCGATGATTACGAGGAGACAAGAAGAAAGCAGCTCAAGCTTGTTGGCTGTCTCAACCAA
TGGCCTTAGTGAAAGAGAAGTTGTTGTCCAAATAGTTTCCACCTTTCATGGAATCCCTTTGTCTTGGATCTTGCTTGGTTTACATGATGATGGGCTTCACCCTCTCAATA
TTTCTTCATCT
Protein sequenceShow/hide protein sequence
LYIWPPCSITSVHKKSNKAAMLALSSSSSSSRLFLSNRKGWPFGELSEQNCMDKVASENICESPLFDLHFTSPKEVGYKSIPSTIGDVDDLLKRLSNPATVSVALKYIPN
LQKQVEELVDKKRQLMFSMITRRQEESSSSLLAVSTNGLSEREVVVQIVSTFHGIPLSWILLGLHDDGLHPLNISSS