CuGenDBv2

Gene ID	Lsi01G018200
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box domain-containing protein
Genome location	chr01:18462246..18464118
RNA-Seq Expression	Lsi01G018200
Synteny	Lsi01G018200
Gene Ontology terms	GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domains	IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7027654.1 putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-92

78.11

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Query:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT---------PPQSILTVVKHGRELAVD
        SWSI+MAS++LWEPIF+A FPSL+NLA +SSA TSPPVSFRRLFGLGHTAAARRRPAPSKP LSLSDLVFV++          P+ + TVVKHG ELAVD
Subjt:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT---------PPQSILTVVKHGRELAVD

Query:  RNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLKLGLCGNGRG---SK
        RNGLFKFDIN+ +   +   VVIGA EEVEVVWN+VLEGW  VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIVADLKLG+C NG G    K
Subjt:  RNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLKLGLCGNGRG---SK

Query:  VRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF
        VRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLF
Subjt:  VRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF

XP_008449214.1 PREDICTED: probable F-box protein At5g04010 [Cucumis melo]

1.1e-96

76.71

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Query:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT-----------------------PPQS
        SWS++MASDHLWEPIFTANFPSL NLA  S+  +SPPVSFRRLFGLG+ AAARRRPA  KPTLSLSDLVFV++                        PQS
Subjt:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT-----------------------PPQS

Query:  ILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK
         LTVVKHG EL V+RNGLFKFDINL++      PVVIGAREEVEVVWN+VLEGW GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIV DL+
Subjt:  ILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK

Query:  LGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV
        LGLCGNG GS KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF ANV
Subjt:  LGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV

XP_022925168.1 probable F-box protein At5g04010 [Cucurbita moschata]

1.3e-89

74.09

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Query:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT----------------------PPQSI
        SWSI+MAS++LWEPIF+A FPSL+NLA +SSA TSPPVSFRRLFGLGHTAAARRRPAPSKP LSLSDLVFV++                       P+ +
Subjt:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT----------------------PPQSI

Query:  LTVVKHGRELAVDRNGLFKFDINLDDEKGNGGP-VVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK
         TVVKHG ELAVDRN LFKFDIN+     NG   VVIGA EEVEVVWN+VLEGW  VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIVADLK
Subjt:  LTVVKHGRELAVDRNGLFKFDINLDDEKGNGGP-VVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK

Query:  LGLCGNGRG---SKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF
        LG+C NG G    KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLF
Subjt:  LGLCGNGRG---SKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF

XP_031740421.1 probable F-box protein At5g04010 [Cucumis sativus]

2.7e-98

77.51

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Query:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT-----------------------PPQS
        SWS++MASDHLWEPIFTANFPSL NLA  ++ ATSP VSFRRLFGLG+ AAARRRPA SKP+LSLSDLVFV++                        PQS
Subjt:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT-----------------------PPQS

Query:  ILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK
         LT+VKHG EL VDRNGLFKFDINL +E G+G PVVIGAREEVEVVWN+VLEGW GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPN VSGGIV DL+
Subjt:  ILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK

Query:  LGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV
        LGLCGNG GS KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF ANV
Subjt:  LGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV

XP_038883618.1 probable F-box protein At5g04010 [Benincasa hispida]

5.4e-107

83.4

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Query:  WSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT---------------------PPQSILT
        WSI+MASDHLWEPIFTANFPSLSNLAISSSA TSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDL+FV++                     PPQSILT
Subjt:  WSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT---------------------PPQSILT

Query:  VVKHGRELAVDRNGLFKFDINLDDEKGN-GGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLKLG
        VVKHG ELAVDRNGLFKFDINLD + GN GGPVVIG REEVEVVWNLVLEGW GVFTMIECGGRVGMAPRADGWFSEELPAAGCC N VSGGIVADLKLG
Subjt:  VVKHGRELAVDRNGLFKFDINLDDEKGN-GGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLKLG

Query:  LCG-NGRGSKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV
        L G NG GSKVRIESVSVGMMS+VSWRYVSLDDGLMYLQHFLF A+V
Subjt:  LCG-NGRGSKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LDE5 F-box domain-containing protein

1.3e-98

77.51

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Query:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT-----------------------PPQS
        SWS++MASDHLWEPIFTANFPSL NLA  ++ ATSP VSFRRLFGLG+ AAARRRPA SKP+LSLSDLVFV++                        PQS
Subjt:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT-----------------------PPQS

Query:  ILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK
         LT+VKHG EL VDRNGLFKFDINL +E G+G PVVIGAREEVEVVWN+VLEGW GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPN VSGGIV DL+
Subjt:  ILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK

Query:  LGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV
        LGLCGNG GS KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF ANV
Subjt:  LGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV

A0A1S3BLJ1 probable F-box protein At5g04010

5.4e-97

76.71

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Query:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT-----------------------PPQS
        SWS++MASDHLWEPIFTANFPSL NLA  S+  +SPPVSFRRLFGLG+ AAARRRPA  KPTLSLSDLVFV++                        PQS
Subjt:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT-----------------------PPQS

Query:  ILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK
         LTVVKHG EL V+RNGLFKFDINL++      PVVIGAREEVEVVWN+VLEGW GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIV DL+
Subjt:  ILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK

Query:  LGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV
        LGLCGNG GS KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF ANV
Subjt:  LGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV

A0A5D3DEJ6 Putative F-box protein

5.4e-97

76.71

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Query:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT-----------------------PPQS
        SWS++MASDHLWEPIFTANFPSL NLA  S+  +SPPVSFRRLFGLG+ AAARRRPA  KPTLSLSDLVFV++                        PQS
Subjt:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT-----------------------PPQS

Query:  ILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK
         LTVVKHG EL V+RNGLFKFDINL++      PVVIGAREEVEVVWN+VLEGW GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIV DL+
Subjt:  ILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK

Query:  LGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV
        LGLCGNG GS KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF ANV
Subjt:  LGLCGNGRGS-KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV

A0A6J1EEG3 probable F-box protein At5g04010

6.4e-90

74.09

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Query:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT----------------------PPQSI
        SWSI+MAS++LWEPIF+A FPSL+NLA +SSA TSPPVSFRRLFGLGHTAAARRRPAPSKP LSLSDLVFV++                       P+ +
Subjt:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT----------------------PPQSI

Query:  LTVVKHGRELAVDRNGLFKFDINLDDEKGNGGP-VVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK
         TVVKHG ELAVDRN LFKFDIN+     NG   VVIGA EEVEVVWN+VLEGW  VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIVADLK
Subjt:  LTVVKHGRELAVDRNGLFKFDINLDDEKGNGGP-VVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLK

Query:  LGLCGNGRG---SKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF
        LG+C NG G    KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLF
Subjt:  LGLCGNGRG---SKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF

A0A6J1HMX9 probable F-box protein At5g04010

2.7e-88

72.36

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Query:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT----------------------PPQSI
        SWSI+MAS+HLWEPIF+A FPSL+NLA +SSA  SPP+SF RLFGLGHTAAARRRPAPSKP LSLSDL+FV++                       P+ +
Subjt:  SWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLVFVVT----------------------PPQSI

Query:  LTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLKL
         T+VKHG EL VDRNGLFKFDIN+   KG+   VVIGA  EVEVVWN+VLEGW  VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIVADLKL
Subjt:  LTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVADLKL

Query:  GLCGNGRGSK---VRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF
        G+C NG G K   VRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLF
Subjt:  GLCGNGRGSK---VRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLF

SwissProt top hits

e value

%identity

Alignment

Q5EAF6 Probable F-box protein At5g04010

1.4e-12

28.19

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Query:  AASWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRR-PAPSKPTLSLSDLVFV--VTPPQSILTVVKHGRELAVDRNGL
        + +WS   +S+ LW+ +  A   S+   AI+   A    +S++RL     +AA RRR   P++P +SLSDLVF+  V+       VVK G++L    N  
Subjt:  AASWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRR-PAPSKPTLSLSDLVFV--VTPPQSILTVVKHGRELAVDRNGL

Query:  FKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGG--IVADLKLGLCGNGRGSKVRIES
        F+ + ++ D             ++V + WN+VL  +  +F M E    +       GWF++ELP      N    G  +V ++K         ++  ++ 
Subjt:  FKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGG--IVADLKLGLCGNGRGSKVRIES

Query:  VSVGMMSVVSWRYVSLDDGLMYLQHFL
        V   +    +W+ + +DD L YLQ FL
Subjt:  VSVGMMSVVSWRYVSLDDGLMYLQHFL

Arabidopsis top hits

e value

%identity

Alignment

AT5G04010.1 F-box family protein

9.7e-14

28.19

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Query:  AASWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRR-PAPSKPTLSLSDLVFV--VTPPQSILTVVKHGRELAVDRNGL
        + +WS   +S+ LW+ +  A   S+   AI+   A    +S++RL     +AA RRR   P++P +SLSDLVF+  V+       VVK G++L    N  
Subjt:  AASWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRR-PAPSKPTLSLSDLVFV--VTPPQSILTVVKHGRELAVDRNGL

Query:  FKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGG--IVADLKLGLCGNGRGSKVRIES
        F+ + ++ D             ++V + WN+VL  +  +F M E    +       GWF++ELP      N    G  +V ++K         ++  ++ 
Subjt:  FKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGG--IVADLKLGLCGNGRGSKVRIES

Query:  VSVGMMSVVSWRYVSLDDGLMYLQHFL
        V   +    +W+ + +DD L YLQ FL
Subjt:  VSVGMMSVVSWRYVSLDDGLMYLQHFL

Sequences

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CDS sequence

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ACACCTGAGTTCCACGTGTCGCCAATCAAATTTCACCACTCTATAAATAATCACATTAATCGAATCTTCACTAAACCGATCCTTCTCTTTCTTCTTCATGGCACAACCTT
TTCCATCTCCTTCCTCACCGCCGCCGCCTCATGGTCCATTGCCATGGCCTCCGACCACCTTTGGGAGCCCATTTTCACGGCCAATTTCCCTTCTCTCTCTAACCTTGCTA
TCTCCTCCTCCGCCGCCACGTCCCCACCTGTGTCCTTCCGCCGCCTCTTTGGTCTCGGCCACACTGCTGCCGCTCGTCGCCGTCCTGCTCCCTCGAAACCCACTCTTTCC
CTCTCCGACCTTGTCTTCGTCGTCACTCCGCCCCAATCCATCCTCACCGTCGTGAAGCACGGCAGGGAGCTAGCCGTGGATCGAAACGGGCTATTCAAATTCGACATAAA
TCTCGACGACGAAAAGGGCAATGGCGGTCCGGTGGTGATCGGAGCTAGAGAGGAGGTGGAGGTGGTGTGGAACCTAGTGTTAGAAGGGTGGGCGGGGGTGTTTACAATGA
TTGAATGTGGAGGAAGAGTGGGAATGGCTCCGAGAGCCGACGGGTGGTTCTCGGAGGAGCTCCCGGCGGCAGGGTGCTGCCCGAACGCCGTGAGCGGCGGCATAGTGGCG
GATCTGAAACTGGGGTTGTGTGGAAATGGAAGAGGGAGTAAGGTTAGGATTGAAAGTGTGAGTGTGGGGATGATGAGTGTTGTGAGTTGGAGATATGTGAGTTTGGATGA
TGGGTTAATGTATTTGCAACATTTTTTGTTCAAAGCAAATGTC

mRNA sequence

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Protein sequence

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TPEFHVSPIKFHHSINNHINRIFTKPILLFLLHGTTFSISFLTAAASWSIAMASDHLWEPIFTANFPSLSNLAISSSAATSPPVSFRRLFGLGHTAAARRRPAPSKPTLS
LSDLVFVVTPPQSILTVVKHGRELAVDRNGLFKFDINLDDEKGNGGPVVIGAREEVEVVWNLVLEGWAGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVA
DLKLGLCGNGRGSKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFKANV

Lsi01G018200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome