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Lsi01G018290 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G018290
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionThreonine-tRNA ligase
Genome locationchr01:18949214..18956152
RNA-Seq ExpressionLsi01G018290
SyntenyLsi01G018290
Gene Ontology termsGO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595681.1 hypothetical protein SDJN03_12234, partial [Cucurbita argyrosperma subsp. sororia]5.7e-2683.75Show/hide
Query:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
        MAEPL GG+HDLEQTLKPF++RASEAEDRLSRLEAALLSKKD H+EEHLKTISELQSKLDSANEALIA++KKA     EN
Subjt:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
XP_008464608.1 PREDICTED: uncharacterized protein LOC103502450 isoform X1 [Cucumis melo]1.3e-2590.41Show/hide
Query:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKA
        MAEP GGGNHDLEQTLKPFFQRAS+AEDRLSRLEAALLSKKD HNEEHLKTISELQ+KLDSAN ALI +RKKA
Subjt:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKA
XP_008464609.1 PREDICTED: uncharacterized protein LOC103502450 isoform X2 [Cucumis melo]7.5e-2685Show/hide
Query:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
        MAEP GGGNHDLEQTLKPFFQRAS+AEDRLSRLEAALLSKKD HNEEHLKTISELQ+KLDSAN ALI +RKKA     EN
Subjt:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
XP_022925102.1 uncharacterized protein LOC111432443 [Cucurbita moschata]5.7e-2683.75Show/hide
Query:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
        MAEPL GG+HDLEQTLKPF++RASEAEDRLSRLEAALLSKKD H+EEHLKTISELQSKLDSANEALIA++KKA     EN
Subjt:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
XP_022966502.1 uncharacterized protein LOC111466136 [Cucurbita maxima]2.0e-2685Show/hide
Query:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
        MAEPL GG+HDLEQTLKPF+QRASEAEDRLSRLEAALLSKKD H+EEHLKTISELQSKLDSANEALIA++KKA     EN
Subjt:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
TrEMBL top hitse value%identityAlignment
A0A1S3CLW0 uncharacterized protein LOC103502450 isoform X23.6e-2685Show/hide
Query:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
        MAEP GGGNHDLEQTLKPFFQRAS+AEDRLSRLEAALLSKKD HNEEHLKTISELQ+KLDSAN ALI +RKKA     EN
Subjt:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
A0A1S3CM07 uncharacterized protein LOC103502450 isoform X16.2e-2690.41Show/hide
Query:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKA
        MAEP GGGNHDLEQTLKPFFQRAS+AEDRLSRLEAALLSKKD HNEEHLKTISELQ+KLDSAN ALI +RKKA
Subjt:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKA
A0A6J1DM00 uncharacterized protein LOC1110212881.2e-2482.5Show/hide
Query:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
        MAEPL GG HDLEQ+LKPFFQRASEAEDRLSRLEA LLSKKD  +EEHLKTI+ELQSKLDSANEALIA+RKKA     EN
Subjt:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
A0A6J1EAW7 uncharacterized protein LOC1114324432.8e-2683.75Show/hide
Query:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
        MAEPL GG+HDLEQTLKPF++RASEAEDRLSRLEAALLSKKD H+EEHLKTISELQSKLDSANEALIA++KKA     EN
Subjt:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
A0A6J1HN54 uncharacterized protein LOC1114661369.5e-2785Show/hide
Query:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
        MAEPL GG+HDLEQTLKPF+QRASEAEDRLSRLEAALLSKKD H+EEHLKTISELQSKLDSANEALIA++KKA     EN
Subjt:  MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G57320.1 unknown protein1.5e-0842.47Show/hide
Query:  NHDLEQTLKPFFQRASEAEDRLSRLEAALLS-KKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
        +H L + LKPFF RA+EA++RL++LEAAL S K D+ + + ++   +LQSKL+ AN  +  ++ K ++  +EN
Subjt:  NHDLEQTLKPFFQRASEAEDRLSRLEAALLS-KKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVEN
AT3G57320.2 unknown protein4.9e-0744.62Show/hide
Query:  NHDLEQTLKPFFQRASEAEDRLSRLEAALLS-KKDVHNEEHLKTISELQSKLDSANEALIAQRKK
        +H L + LKPFF RA+EA++RL++LEAAL S K D+ + + ++   +LQSKL+ AN  +  ++ K
Subjt:  NHDLEQTLKPFFQRASEAEDRLSRLEAALLS-KKDVHNEEHLKTISELQSKLDSANEALIAQRKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAACCACTTGGCGGAGGCAACCACGATCTCGAGCAGACCTTGAAGCCCTTCTTTCAAAGAGCTTCTGAAGCCGAGGATCGTTTGTCAAGATTAGAAGCTGCACT
CTTGAGTAAGAAAGATGTCCATAACGAAGAACATCTGAAAACGATCAGTGAACTCCAGTCGAAGCTAGACAGCGCAAATGAAGCACTAATCGCACAACGGAAAAAGGCAA
GAGAGAAATTTGTAGAGAATGAAGAAGAGATTGTGTTAGGAACACAATTAGTTCCATACTGTCCTAACTTCGAGATGGGGAATACAAGTAATGAGCATGTGAACATTGAA
GAGCATGAGCATACTATTAACGAAACAGTTGATGAGGAGATTATATGTGAACATCCTGATGATATTATGGGTCAAGAAAATGTAACAACTGAGACTGGACTTAATTGTGA
CCAACTAGAGGATGACAACGTGCCGCTCAAAACTAAGAGGAGAGAAATATCCAAAGACAGATGGATAAAAGACAATAAAAGATCTGTTCCAAGGACGCGTTCAAGCACGG
GTGGAATGAGAACATCACAACAACAAACTGAAAGGAAA
mRNA sequenceShow/hide mRNA sequence
TTTTATTCCAAAAGCGCCCTCTTAGAATCTTCATTTCGAAGTTGGAGCTTTCGCAACAATGGCGGAACCACTTGGCGGAGGCAACCACGATCTCGAGCAGACCTTGAAGC
CCTTCTTTCAAAGAGCTTCTGAAGCCGAGGATCGTTTGTCAAGATTAGAAGCTGCACTCTTGAGTAAGAAAGATGTCCATAACGAAGAACATCTGAAAACGATCAGTGAA
CTCCAGTCGAAGCTAGACAGCGCAAATGAAGCACTAATCGCACAACGGAAAAAGGCAAGAGAGAAATTTGTAGAGAATGAAGAAGAGATTGTGTTAGGAACACAATTAGT
TCCATACTGTCCTAACTTCGAGATGGGGAATACAAGTAATGAGCATGTGAACATTGAAGAGCATGAGCATACTATTAACGAAACAGTTGATGAGGAGATTATATGTGAAC
ATCCTGATGATATTATGGGTCAAGAAAATGTAACAACTGAGACTGGACTTAATTGTGACCAACTAGAGGATGACAACGTGCCGCTCAAAACTAAGAGGAGAGAAATATCC
AAAGACAGATGGATAAAAGACAATAAAAGATCTGTTCCAAGGACGCGTTCAAGCACGGGTGGAATGAGAACATCACAACAACAAACTGAAAGGAAA
Protein sequenceShow/hide protein sequence
MAEPLGGGNHDLEQTLKPFFQRASEAEDRLSRLEAALLSKKDVHNEEHLKTISELQSKLDSANEALIAQRKKAREKFVENEEEIVLGTQLVPYCPNFEMGNTSNEHVNIE
EHEHTINETVDEEIICEHPDDIMGQENVTTETGLNCDQLEDDNVPLKTKRREISKDRWIKDNKRSVPRTRSSTGGMRTSQQQTERK