CuGenDBv2

Gene ID	Lsi01G018320
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal protein subunit S4
Genome location	chr01:18987076..19002662
RNA-Seq Expression	Lsi01G018320
Synteny	Lsi01G018320
Gene Ontology terms	GO:0045903 - positive regulation of translational fidelity (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AUD56944.1 ribosomal protein subunit S4 [Faramea multiflora]

3.9e-54

91.67

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD
        GSSF EHNRMKRNLYH KSLFLS RRNEKNRN+PTRTKSPIV NSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLK VV YGPNIGHIPHD
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD

Query:  IRLKDPNKALRSENGRGQNI
        IRLKDPN  LRS NGRGQNI
Subjt:  IRLKDPNKALRSENGRGQNI

AUD56954.1 ribosomal protein subunit S4 [Kohautia caespitosa]

3.9e-54

91.67

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD
        GSSF EHNRMKRNLYH KSLFLS RRNEKNRN+PTRTKSPIV NSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLK VV YGPNIGHIPHD
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD

Query:  IRLKDPNKALRSENGRGQNI
        IRLKDPN  LRS NGRGQNI
Subjt:  IRLKDPNKALRSENGRGQNI

WP_131747055.1 hypothetical protein [Candidatus Frankia meridionalis]

6.0e-55

92.5

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD
        GSSF EHNRMKRN YH KSLFLSNRRNEKNRNLPTRT+SPIV NSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLK VVSYGPNIGHIPHD
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD

Query:  IRLKDPNKALRSENGRGQNI
        IRLKDPN  LRS NGRGQNI
Subjt:  IRLKDPNKALRSENGRGQNI

WP_131796643.1 hypothetical protein [Candidatus Frankia datiscae]

8.7e-54

91.67

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD
        GSSF EHNRMKRN YH KSLFLSNRRNEKNRNLPTRT+SPIV NSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLK VVSYGPNIGHIPHD
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD

Query:  IRLKDPNKALRSENGRGQNI
        IRLKD N  LRS NGRGQNI
Subjt:  IRLKDPNKALRSENGRGQNI

YP_009913620.1 ribosomal protein S4 [Luffa acutangula]

3.5e-55

93.33

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD
        GSSF EHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRT+SPIV NSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEVNHRTLK VVSYGPNIGHIPHD
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD

Query:  IRLKDPNKALRSENGRGQNI
        IRLKDPN  LRS NGRGQNI
Subjt:  IRLKDPNKALRSENGRGQNI

TrEMBL top hits

e value

%identity

Alignment

A0A2H4YAC6 Ribosomal protein subunit S4

1.9e-54

91.67

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD
        GSSF EHNRMKRNLYH KSLFLS RRNEKNRN+PTRTKSPIV NSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLK VV YGPNIGHIPHD
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD

Query:  IRLKDPNKALRSENGRGQNI
        IRLKDPN  LRS NGRGQNI
Subjt:  IRLKDPNKALRSENGRGQNI

A0A2H4YAD8 Ribosomal protein subunit S4

1.9e-54

91.67

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD
        GSSF EHNRMKRNLYH KSLFLS RRNEKNRN+PTRTKSPIV NSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLK VV YGPNIGHIPHD
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD

Query:  IRLKDPNKALRSENGRGQNI
        IRLKDPN  LRS NGRGQNI
Subjt:  IRLKDPNKALRSENGRGQNI

A0A2H4YAE2 Ribosomal protein subunit S4

5.5e-54

90.83

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD
        GSSF EHNRMKRNLYH KSLFLS RRNEKNRN+PTRT+SPIV NSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRT K VVSYGPNIGHIPHD
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD

Query:  IRLKDPNKALRSENGRGQNI
        IRLKDPN  LRS NGRGQNI
Subjt:  IRLKDPNKALRSENGRGQNI

A0A2H4YAG7 Ribosomal protein subunit S4

5.5e-54

90.83

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD
        GSSF EHNRMKRNLYH KSLFLS RRNEKNRN+PTRT+SPIV NSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRT K VVSYGPNIGHIPHD
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD

Query:  IRLKDPNKALRSENGRGQNI
        IRLKDPN  LRS NGRGQNI
Subjt:  IRLKDPNKALRSENGRGQNI

A0A7D6BZG8 Ribosomal protein S4

1.7e-55

93.33

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD
        GSSF EHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRT+SPIV NSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEVNHRTLK VVSYGPNIGHIPHD
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIPHD

Query:  IRLKDPNKALRSENGRGQNI
        IRLKDPN  LRS NGRGQNI
Subjt:  IRLKDPNKALRSENGRGQNI

SwissProt top hits

e value

%identity

Alignment

Q31708 Ribosomal protein S4, mitochondrial

3.2e-43

78.69

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNS--SLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIP
        GSSF EH RMKRNL  LKSLFLS RR +KN NLPTRT SPIV NS  SLYSNSTYC ASPH+ TMKR+IKRIELPTHY EVN+RT K VV YGPNIGHIP
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNS--SLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIP

Query:  HDIRLKDPNKALRSENGRGQNI
        HDIRLKD N  L S NGRGQNI
Subjt:  HDIRLKDPNKALRSENGRGQNI

Arabidopsis top hits

e value

%identity

Alignment

AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein

1.5e-48

82.79

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNS--SLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIP
        GSSF EH RMKRNL  LKSLFLS RR +KN NLPTRT SPIV NS  SLYSNSTYC ASPH+ TMKR+IKRIELPTHYSEVNHRT K VVSYGPNIGHIP
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNS--SLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIP

Query:  HDIRLKDPNKALRSENGRGQNI
        HDIRLKDPN  LRS NGRGQNI
Subjt:  HDIRLKDPNKALRSENGRGQNI

ATMG00290.1 mitochondrial ribosomal protein S4

1.5e-48

82.79

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Query:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNS--SLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIP
        GSSF EH RMKRNL  LKSLFLS RR +KN NLPTRT SPIV NS  SLYSNSTYC ASPH+ TMKR+IKRIELPTHYSEVNHRT K VVSYGPNIGHIP
Subjt:  GSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNS--SLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKVVVSYGPNIGHIP

Query:  HDIRLKDPNKALRSENGRGQNI
        HDIRLKDPN  LRS NGRGQNI
Subjt:  HDIRLKDPNKALRSENGRGQNI

Sequences

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CDS sequence

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ATGGATACCGAAGGATTTGGTTTCTTCGAGCATTCGAAGAGCTTTAGGAGGTCATTTTCTTATAAATTTGGAGGGATCAAACAAAGAAGTTTGAACGATATGTTGAAGAA
AAACACGATTAAGGAACACAATATTGCTTTTGTAAAAAGTGACTTACACCATTTCAAGAACATGATTCCCACAACCCCCAACATCCCACACAGAATAATTTCAACTCCAA
TCTCGTCATCTCCGCAGCCCGACAACACACCCTTTGGAAAGGACAAGTTACTCTTGAAGAAAAGTGACAAGGTTGAAATCATCGGAGGCCTTTTCTTGTTCTCCATTCCG
AAGGACTTGGATTGTTCTTTCCCGATTTTTGCAACAGTTGCGTTCTTCTATGTAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAGGCAGTTCCTTCCC
TGAGCATAACAGAATGAAAAGGAATTTGTATCATTTGAAATCCCTATTCTTATCAAATAGAAGGAACGAGAAAAATCGAAATCTTCCTACTCGAACAAAAAGTCCTATAG
TTGACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGAAAAATCAAAAGGATCGAACTACCTACTCATTATTCGGAG
GTGAATCATAGAACACTAAAAGTTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACAAAGCTCTTCGGAGCGAAAACGG
ACGTGGCCAAAACATCTAA

mRNA sequence

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Protein sequence

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MDTEGFGFFEHSKSFRRSFSYKFGGIKQRSLNDMLKKNTIKEHNIAFVKSDLHHFKNMIPTTPNIPHRIISTPISSSPQPDNTPFGKDKLLLKKSDKVEIIGGLFLFSIP
KDLDCSFPIFATVAFFYVRRRLRKNKEVWIGKGSSFPEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTKSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSE
VNHRTLKVVVSYGPNIGHIPHDIRLKDPNKALRSENGRGQNI

Lsi01G018320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome