CuGenDBv2

Gene ID	Lsi01G018330
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	30S ribosomal protein S7, chloroplastic
Genome location	chr01:18987975..18988364
RNA-Seq Expression	Lsi01G018330
Synteny	Lsi01G018330
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000235 - Ribosomal protein S5/S7 IPR023798 - Ribosomal protein S7 domain IPR036823 - Ribosomal protein S7 domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ARD00025.1 ribosomal protein S7 [Margyricarpus pinnatus]

1.4e-49

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAE+K AK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRAMKKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGAFRKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

QPD79335.1 ribosomal protein S7 [Anemone nemorosa]

1.9e-49

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AKFDPIYRNRLVNMLVNRILKH KKSLAYQIIYRA+KKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

WP_131767149.1 30S ribosomal protein S7 [Candidatus Frankia datiscae]

1.9e-49

88.62

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEKIAK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRAMKKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

YP_009169398.1 ribosomal protein S7 [Clematis terniflora]

1.9e-49

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AKFDPIYRNRLVNMLVNRILKH KKSLAYQIIYRA+KKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

YP_009753134.1 ribosomal protein S7 [Corallocarpus boehmii]

1.9e-49

88.62

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEKIAK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRAMKKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

TrEMBL top hits

e value

%identity

Alignment

A0A0H3Y467 30S ribosomal protein S7, chloroplastic

9.0e-50

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AKFDPIYRNRLVNMLVNRILKH KKSLAYQIIYRA+KKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

A0A1V0IUB0 Ribosomal protein S7

6.9e-50

87.8

Show/hide

Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAE+K AK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRAMKKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGAFRKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

A0A346IS23 30S ribosomal protein S7, chloroplastic

9.0e-50

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AKFDPIYRNRLVNMLVNRILKH KKSLAYQIIYRA+KKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

A0A650FFZ0 30S ribosomal protein S7, chloroplastic

9.0e-50

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AKFDPIYRNRLVNMLVNRILKH KKSLAYQIIYRA+KKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

A0A6M3RUB1 30S ribosomal protein S7, chloroplastic

9.0e-50

88.62

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEKIAK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRAMKKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

SwissProt top hits

e value

%identity

Alignment

B1NWJ5 30S ribosomal protein S7, chloroplastic

9.3e-52

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRAMKKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

Q09WV9 30S ribosomal protein S7, chloroplastic

7.1e-52

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRAMKKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

Q49KT8 30S ribosomal protein S7, chloroplastic

9.3e-52

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRAMKKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

Q4VZK9 30S ribosomal protein S7, chloroplastic

9.3e-52

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEKI K DPIYRNRLVNMLVNRILKH KKSLAYQIIYRAMKKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

Q6KGY2 30S ribosomal protein S7, chloroplastic

9.3e-52

87.8

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRAMKKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

Arabidopsis top hits

e value

%identity

Alignment

ATCG00900.1 Ribosomal protein S7p/S5e family protein

1.5e-52

86.99

Show/hide

Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRA+KKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

ATCG01240.1 ribosomal protein S7

1.5e-52

86.99

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Query:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV
        MSRRGTAEEK AK DPIYRNRLVNMLVNRILKH KKSLAYQIIYRA+KKIQQKTETNP SVLRQAIRGVTPDIAVKARRVG STHQVPIEIGSTQGK L 
Subjt:  MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLV

Query:  IRWLLGAFRKRPGRKGFVKNQSQ
        IRWLLGA RKRPGR    K  S+
Subjt:  IRWLLGAFRKRPGRKGFVKNQSQ

Sequences

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CDS sequence

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ATGTCACGTCGAGGTACTGCAGAAGAAAAAATTGCAAAATTCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGAAAAAAAATC
ATTGGCTTATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACCATCTGTTTTACGTCAAGCAATTCGTGGAGTAACTCCCGATATAG
CAGTAAAGGCAAGACGTGTAGGCAGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAACACTTGTCATTCGTTGGTTATTAGGGGCATTCCGAAAA
CGTCCGGGTCGAAAAGGGTTTGTGAAGAATCAATCACAACAAGAAGGGTACATTACATAA

mRNA sequence

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Protein sequence

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MSRRGTAEEKIAKFDPIYRNRLVNMLVNRILKHEKKSLAYQIIYRAMKKIQQKTETNPPSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKTLVIRWLLGAFRK
RPGRKGFVKNQSQQEGYIT

Lsi01G018330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome