CuGenDBv2

Gene ID	Lsi01G018360
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ribosomal RNA-processing protein 17
Genome location	chr01:19018978..19023815
RNA-Seq Expression	Lsi01G018360
Synteny	Lsi01G018360
Gene Ontology terms	GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008455785.1 PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]

2.6e-74

83.17

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEAMRR RIEARKKRKLEKDLVLYGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN
        D         EDEEE+PLAP SE  TYD+GN+KVTVTTSEVSRE E D  DKPQTA AQL+ K+KKHNLPITKKK FKKV+KQRSRPK RSKR+K+KGR 
Subjt:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN

Query:  KK
        KK
Subjt:  KK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

1.9e-72

81.19

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK EK+LVLYGG+LPADRPVDEQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN
        DH        E+EEEKP AP+SETTTYDSGNIKVTV TSEVSR+ E    DK QTAT QLVAK+KKHNLPITKKK FKKV+KQ+SRPK RSKR+K+KGR 
Subjt:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN

Query:  KK
        KK
Subjt:  KK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

1.2e-71

79.7

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK+EK+LVL+GGVLPADRPVDEQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN
        D     +D DEDEEEKPLAP+SETTTYDSGNIKVTVTTSEV R+EE D  DKPQ +T+QL+AK+KKH+LP+TKKK FKKV++++SR KSRSK +K+KGR 
Subjt:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN

Query:  KK
        KK
Subjt:  KK

XP_031740787.1 ribosomal RNA-processing protein 17 isoform X1 [Cucumis sativus]

4.9e-73

82.35

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND
        MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEAMRR RIEARKKRKLEKDLVL+GGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTA--TAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKG
        D          +EEE+PLAPLSE TTYD+GN+KVTVTTSEVSRE+E D  DKPQTA  TAQL+ K+KKHNLPITKKK FKKV+KQR RPK RSKR+K+KG
Subjt:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTA--TAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKG

Query:  RNKK
        R KK
Subjt:  RNKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

1.8e-78

85.64

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NDGEEG ELAQPHARHIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQQEEA+RRKRIEARKKR+LEKDLVLYGGVLPADRPVDE+ND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN
        DH    E+ +EDEEEKPLAP SETTTYDSGNIKVTV TSEVSREEE D  DKPQTAT QL AK+KKHNLP+TKKK FKKV+KQRSRPK+RSKR+KRKG+ 
Subjt:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN

Query:  KK
        KK
Subjt:  KK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

2.4e-73

82.35

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND
        MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEAMRR RIEARKKRKLEKDLVL+GGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTA--TAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKG
        D          +EEE+PLAPLSE TTYD+GN+KVTVTTSEVSRE+E D  DKPQTA  TAQL+ K+KKHNLPITKKK FKKV+KQR RPK RSKR+K+KG
Subjt:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTA--TAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKG

Query:  RNKK
        R KK
Subjt:  RNKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

1.3e-74

83.17

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEAMRR RIEARKKRKLEKDLVLYGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN
        D         EDEEE+PLAP SE  TYD+GN+KVTVTTSEVSRE E D  DKPQTA AQL+ K+KKHNLPITKKK FKKV+KQRSRPK RSKR+K+KGR 
Subjt:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN

Query:  KK
        KK
Subjt:  KK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

9.1e-73

81.19

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK EK+LVLYGG+LPADRPVDEQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN
        DH        E+EEEKP AP+SETTTYDSGNIKVTV TSEVSR+ E    DK QTAT QLVAK+KKHNLPITKKK FKKV+KQ+SRPK RSKR+K+KGR 
Subjt:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN

Query:  KK
        KK
Subjt:  KK

A0A6J1EG67 ribosomal RNA-processing protein 17

7.7e-72

80.2

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK+EKDLVL+GGVLPADRPVDEQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN
        D     +D DEDEEEKPLAP+SETT YDSGNIKVTVTTSEV R+EE D  DKPQ +T+QL+AK+KKH+LPITKKK FKKV++++SR KSRSK +K+KGR 
Subjt:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN

Query:  KK
        KK
Subjt:  KK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

5.0e-71

79.21

Show/hide

Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND
        MVKN+  EGG L QP++RH+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA RRKRIE RKKRK+EKDLVL+GGVLPADRPVDEQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN
        D     +D DEDEEEKPLAP+SETTTYDSGNIKVTVTTSEV REEE D  DKPQ +T+QL+AK+KKH+LPITKKK FKKV++++SR KSRSK +K+KGR 
Subjt:  DHEDEDEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRN

Query:  KK
        KK
Subjt:  KK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

1.3e-34

56.19

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Query:  EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQNDDHEDE
        EE G LA P  ARHI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA RRKRIEARK RKLE+ +V   G         E N+D E E
Subjt:  EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQNDDHEDE

Query:  DEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDL-TDKPQTATAQLVAK-EKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRK
        DE + EDEE +P A  S TT YD+G +KVTVTTSE+SREEE  +  +K Q+  +   AK   K  +P+ K K  K+ S++RS  K+  KR+K+K
Subjt:  DEDEDEDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDL-TDKPQTATAQLVAK-EKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRK

Sequences

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CDS sequence

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ATGGTGAAGAACGACGGAGAAGAAGGGGGCGAGCTCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAA
AGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCA
AAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGGCCGGTTGATGAACAGAATGATGATCACGAGGATGAGGATGAGGATGAGGAT
GAGGATGAGGAAGAGAAGCCATTGGCACCACTTTCTGAGACAACAACGTACGACAGCGGAAATATCAAAGTTACTGTGACAACGAGTGAGGTATCTCGGGAAGAAGAATT
CGATCTCACTGACAAGCCACAGACAGCAACAGCCCAATTGGTTGCAAAGGAAAAGAAACATAACCTGCCAATTACCAAAAAGAAGGCATTCAAGAAAGTTTCAAAACAGA
GGTCAAGGCCAAAGTCTCGAAGTAAAAGAGAGAAAAGAAAAGGAAGGAACAAGAAATAG

mRNA sequence

Show/hide mRNA sequence

AAGAGCTTCACATTATTTCTTGAGATGGTTCATCAAAAACAAAAACCTAAACACATTGAGAGAGAGAGGGAAAAACCACACACGCAGCCGTAGGAACGAAAATTGAGGCG
CCGGAATCTGAAGGTGAAAGCACGGCGTGGGTCTTCGGTGTAGAGGGCGGAACTCGCTGGCGGTGGCCGGTGGGTCTTTGGTTTCGGAGGTCAGAGCGGCGGGTTTTTTG
GGTCTCAGTTCAGCGGCGACGGGGCAAATTACTGGCGTGTGGGTCTCGGTCAAGAGGCTGGGTAAAATCGTGGGTCACGATTTGAAGGGCTGGACAGTCGACTACAGAGA
CTGAGAGGCGGCGGTAAAGTCGAGTTTGTTATTCTCTTTCAAGAGAGTGTTATAGTTAGAGGGCGGTACCATGGTGAAGAACGACGGAGAAGAAGGGGGCGAGCTCGCAC
AGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAG
AAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGG
TGTTCTACCAGCTGACCGGCCGGTTGATGAACAGAATGATGATCACGAGGATGAGGATGAGGATGAGGATGAGGATGAGGAAGAGAAGCCATTGGCACCACTTTCTGAGA
CAACAACGTACGACAGCGGAAATATCAAAGTTACTGTGACAACGAGTGAGGTATCTCGGGAAGAAGAATTCGATCTCACTGACAAGCCACAGACAGCAACAGCCCAATTG
GTTGCAAAGGAAAAGAAACATAACCTGCCAATTACCAAAAAGAAGGCATTCAAGAAAGTTTCAAAACAGAGGTCAAGGCCAAAGTCTCGAAGTAAAAGAGAGAAAAGAAA
AGGAAGGAACAAGAAATAGGTAATTATACTAAGCTATTTATTCACTCTTTACTAAATGTTCGTTGTGATATGATTTATACGTTATCTCATGAGAATATGGAGTGATCTTG
AGCATTGGCTGTAGGGAGTTTGAGGGTCTTGAATTACTTTGTAATTGCTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCCTTTTTATGAGAAGCTAAAATGATTCATT
CAGAACTCCAAGAAGAAAAAACAACATATCATCCAAGTATTGAAAAATTCTCGTATTACTTTACTG

Protein sequence

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MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKRKLEKDLVLYGGVLPADRPVDEQNDDHEDEDEDED
EDEEEKPLAPLSETTTYDSGNIKVTVTTSEVSREEEFDLTDKPQTATAQLVAKEKKHNLPITKKKAFKKVSKQRSRPKSRSKREKRKGRNKK

Lsi01G018360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome