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Lsi01G018410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G018410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPyrimidine-specific ribonucleoside hydrolase RihB
Genome locationchr01:19245384..19275846
RNA-Seq ExpressionLsi01G018410
SyntenyLsi01G018410
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAT96348.1 hypothetical protein VIGAN_08326900 [Vigna angularis var. angularis]5.8e-1850.39Show/hide
Query:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTS--RRQSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP
        K S S R++P +++D   TF S +A  L  +PS   IN  T  ST+ AVT +    QS +T PT  T V+    LGWSECIG  A GTP+VMLS HEF P
Subjt:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTS--RRQSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP

Query:  QCVMNPPVAQWLSISTCGAQSLITNPL
        Q ++NPPV  WL IS  GAQSL  +PL
Subjt:  QCVMNPPVAQWLSISTCGAQSLITNPL

ERN15756.1 hypothetical protein AMTR_s00039p00079820 [Amborella trichopoda]4.6e-1553.7Show/hide
Query:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRRQ--SSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP
        K S + RD P      R    S +AF    APSSD I+F T  ST SA+TTS     S + TPT +T V +  F GWSECIG A  GTP+ MLSMHEF P
Subjt:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRRQ--SSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP

Query:  QCVMNPPV
        QCVMNPPV
Subjt:  QCVMNPPV

GER57529.1 pyrimidine-specific ribonucleoside hydrolase RihB, partial [Striga asiatica]8.4e-1753.64Show/hide
Query:  PSLSAFFLTCAPSSD-TINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQPQCVMNPPVAQWLSISTCGA
        P  +A  L  +PSS   IN  T S T  A+T S R  QS +T+P   T+VM    + WS C+G A TGTPV+ LS HEF PQCV NPPVA W +ISTCGA
Subjt:  PSLSAFFLTCAPSSD-TINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQPQCVMNPPVAQWLSISTCGA

Query:  QSLITNPLLP
        QSL T+ L+P
Subjt:  QSLITNPLLP

PON53914.1 hypothetical protein PanWU01x14_199110, partial [Parasponia andersonii]6.8e-1952.34Show/hide
Query:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP
        K SNS+RD+P S++DCR   P+ SA FL    S D INF    +T SA  TS R  QS +  PT +  V  T FLGWS CIG A  GTP+VMLS HEF P
Subjt:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP

Query:  QCVMNPPVAQWLSISTCGAQSLITNPLL
        Q + NPPV     IS  GA SL T P+L
Subjt:  QCVMNPPVAQWLSISTCGAQSLITNPLL

PON57033.1 hypothetical protein TorRG33x02_294610 [Trema orientale]4.6e-1552.17Show/hide
Query:  IDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQPQCVMNPPVAQWLS
        +DCR   P+ SA FL    S D INF    +T SA TTS R  QS +  PT +  V S  FLGWS CIG A  GTP+VMLS HEF PQ + NPPV     
Subjt:  IDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQPQCVMNPPVAQWLS

Query:  ISTCGAQSLITNPLL
        IS  GA SL T P+L
Subjt:  ISTCGAQSLITNPLL

TrEMBL top hitse value%identityAlignment
A0A0S3SU27 Uncharacterized protein2.8e-1850.39Show/hide
Query:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTS--RRQSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP
        K S S R++P +++D   TF S +A  L  +PS   IN  T  ST+ AVT +    QS +T PT  T V+    LGWSECIG  A GTP+VMLS HEF P
Subjt:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTS--RRQSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP

Query:  QCVMNPPVAQWLSISTCGAQSLITNPL
        Q ++NPPV  WL IS  GAQSL  +PL
Subjt:  QCVMNPPVAQWLSISTCGAQSLITNPL

A0A2P5BYP0 Uncharacterized protein (Fragment)3.3e-1952.34Show/hide
Query:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP
        K SNS+RD+P S++DCR   P+ SA FL    S D INF    +T SA  TS R  QS +  PT +  V  T FLGWS CIG A  GTP+VMLS HEF P
Subjt:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP

Query:  QCVMNPPVAQWLSISTCGAQSLITNPLL
        Q + NPPV     IS  GA SL T P+L
Subjt:  QCVMNPPVAQWLSISTCGAQSLITNPLL

A0A2P5C7M8 Uncharacterized protein2.2e-1552.17Show/hide
Query:  IDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQPQCVMNPPVAQWLS
        +DCR   P+ SA FL    S D INF    +T SA TTS R  QS +  PT +  V S  FLGWS CIG A  GTP+VMLS HEF PQ + NPPV     
Subjt:  IDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQPQCVMNPPVAQWLS

Query:  ISTCGAQSLITNPLL
        IS  GA SL T P+L
Subjt:  ISTCGAQSLITNPLL

A0A5A7RK42 Pyrimidine-specific ribonucleoside hydrolase RihB (Fragment)4.0e-1753.64Show/hide
Query:  PSLSAFFLTCAPSSD-TINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQPQCVMNPPVAQWLSISTCGA
        P  +A  L  +PSS   IN  T S T  A+T S R  QS +T+P   T+VM    + WS C+G A TGTPV+ LS HEF PQCV NPPVA W +ISTCGA
Subjt:  PSLSAFFLTCAPSSD-TINFRTTSSTASAVTTSRR--QSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQPQCVMNPPVAQWLSISTCGA

Query:  QSLITNPLLP
        QSL T+ L+P
Subjt:  QSLITNPLLP

U5CRB9 Uncharacterized protein2.2e-1553.7Show/hide
Query:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRRQ--SSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP
        K S + RD P      R    S +AF    APSSD I+F T  ST SA+TTS     S + TPT +T V +  F GWSECIG A  GTP+ MLSMHEF P
Subjt:  KASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRRQ--SSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVMLSMHEFQP

Query:  QCVMNPPV
        QCVMNPPV
Subjt:  QCVMNPPV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTTTTGCTTCAAAAATTAAATTCTGAACTTGACGATGGGGCTTCACGAACAACAAAAGCCTCAAATTCCCTACGAGACTCGCCATCGTCTTCCATCGACTGTCG
CACAACATTCCCTAGCCTTTCTGCATTCTTCCTTACCTGTGCCCCTTCCTCCGACACCATCAACTTTCGAACAACCTCCTCCACTGCATCAGCCGTCACCACGTCTCGCC
GCCAATCCTCTAGCACCACCCCTACGCGCAATACCATAGTCATGAGCACTGTGTTCCTCGGCTGGTCGGAGTGCATTGGCCAAGCAGCCACTGGAACCCCCGTCGTCATG
CTCTCCATGCACGAGTTCCAGCCGCAATGCGTCATGAATCCCCCCGTCGCCCAGTGGCTCAGTATCTCCACCTGTGGCGCCCAGTCTCTTATTACCAACCCTCTGTTGCC
AATTAAGTGTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTTTTGCTTCAAAAATTAAATTCTGAACTTGACGATGGGGCTTCACGAACAACAAAAGCCTCAAATTCCCTACGAGACTCGCCATCGTCTTCCATCGACTGTCG
CACAACATTCCCTAGCCTTTCTGCATTCTTCCTTACCTGTGCCCCTTCCTCCGACACCATCAACTTTCGAACAACCTCCTCCACTGCATCAGCCGTCACCACGTCTCGCC
GCCAATCCTCTAGCACCACCCCTACGCGCAATACCATAGTCATGAGCACTGTGTTCCTCGGCTGGTCGGAGTGCATTGGCCAAGCAGCCACTGGAACCCCCGTCGTCATG
CTCTCCATGCACGAGTTCCAGCCGCAATGCGTCATGAATCCCCCCGTCGCCCAGTGGCTCAGTATCTCCACCTGTGGCGCCCAGTCTCTTATTACCAACCCTCTGTTGCC
AATTAAGTGTTTGTAG
Protein sequenceShow/hide protein sequence
MVFLLQKLNSELDDGASRTTKASNSLRDSPSSSIDCRTTFPSLSAFFLTCAPSSDTINFRTTSSTASAVTTSRRQSSSTTPTRNTIVMSTVFLGWSECIGQAATGTPVVM
LSMHEFQPQCVMNPPVAQWLSISTCGAQSLITNPLLPIKCL