; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G018420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G018420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionORF43m
Genome locationchr01:19283759..19284431
RNA-Seq ExpressionLsi01G018420
SyntenyLsi01G018420
Gene Ontology termsGO:0006101 - citrate metabolic process (biological process)
GO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0004108 - citrate (Si)-synthase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM97427.1 hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda]3.3e-2682.28Show/hide
Query:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP
        TWTVVGVG SLRVPSS I GEEDQVGPCEQLD   PFNPLSEMRQKE KSMDR H LHPVGTTRSPQG L + GVA+RP
Subjt:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP

OUZ99998.1 hypothetical protein BVC80_8595g6 [Macleaya cordata]5.7e-2679.75Show/hide
Query:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP
        TWTVVGVG SLRVPSSRI GEEDQVGPCEQLD   PFNPLSEMRQKE KSMDR H LHPVGTTR PQGHL +  + +RP
Subjt:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP

PQP98136.1 hypothetical protein Pyn_20559 [Prunus yedoensis var. nudiflora]2.2e-2581.01Show/hide
Query:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQK-EKSMDRLHHLHPVGTTRSPQGHLWYLGVANRP
        TWTVVGVG S RVPSS I GEEDQVGPCEQLD   PFNPLSEMRQK EKSMDR H LHPVGTTRSPQG L + GVA+RP
Subjt:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQK-EKSMDRLHHLHPVGTTRSPQGHLWYLGVANRP

QHE65624.1 ORF43m [Nitraria roborowskii]8.8e-2783.54Show/hide
Query:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP
        TWTVVGVG SLRVPSS I GEEDQVGPCEQLD   PFNPLSEMRQKE KSMDR H LHPVGTTRSPQG L Y GVA+RP
Subjt:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP

YP_009758287.1 hypothetical protein [Rubus amabilis]2.2e-2581.01Show/hide
Query:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP
        TWTVVGVG S RVPSS I GEEDQVGPCEQLD   PFNPLSEMRQKE KSMDR H LHPVGTTRSPQG L + GVA+RP
Subjt:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP

TrEMBL top hitse value%identityAlignment
A0A200PP77 Uncharacterized protein2.8e-2679.75Show/hide
Query:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP
        TWTVVGVG SLRVPSSRI GEEDQVGPCEQLD   PFNPLSEMRQKE KSMDR H LHPVGTTR PQGHL +  + +RP
Subjt:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP

A0A6B9QF48 ORF43m4.3e-2783.54Show/hide
Query:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP
        TWTVVGVG SLRVPSS I GEEDQVGPCEQLD   PFNPLSEMRQKE KSMDR H LHPVGTTRSPQG L Y GVA+RP
Subjt:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP

A0A6B9QFK3 ORF43m4.3e-2783.54Show/hide
Query:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP
        TWTVVGVG SLRVPSS I GEEDQVGPCEQLD   PFNPLSEMRQKE KSMDR H LHPVGTTRSPQG L Y GVA+RP
Subjt:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP

A0A6B9QGL2 ORF43m4.3e-2783.54Show/hide
Query:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP
        TWTVVGVG SLRVPSS I GEEDQVGPCEQLD   PFNPLSEMRQKE KSMDR H LHPVGTTRSPQG L Y GVA+RP
Subjt:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP

U5CKY2 Uncharacterized protein1.6e-2682.28Show/hide
Query:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP
        TWTVVGVG SLRVPSS I GEEDQVGPCEQLD   PFNPLSEMRQKE KSMDR H LHPVGTTRSPQG L + GVA+RP
Subjt:  TWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKE-KSMDRLHHLHPVGTTRSPQGHLWYLGVANRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTGGGACCTGAAGAAAGAAAAAGATCGATCTCCATCTGTCAAGGAGAAGGCATGGTACCTCAACCAGCTGGGCAAGGGACTACTACTGAAAGAACTCGTAGGTAC
ATGGACGGTAGTTGGAGTTGGCGACTCTCTTAGAGTTCCCTCATCTAGGATCCTTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGTACAAGATCCCTTCA
ACCCTTTGAGCGAAATGCGACAAAAGGAAAAATCCATGGACCGACTCCATCATCTTCACCCCGTAGGAACTACGAGATCACCCCAAGGACACCTTTGGTATCTAGGGGTC
GCGAACCGACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTGGGACCTGAAGAAAGAAAAAGATCGATCTCCATCTGTCAAGGAGAAGGCATGGTACCTCAACCAGCTGGGCAAGGGACTACTACTGAAAGAACTCGTAGGTAC
ATGGACGGTAGTTGGAGTTGGCGACTCTCTTAGAGTTCCCTCATCTAGGATCCTTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGTACAAGATCCCTTCA
ACCCTTTGAGCGAAATGCGACAAAAGGAAAAATCCATGGACCGACTCCATCATCTTCACCCCGTAGGAACTACGAGATCACCCCAAGGACACCTTTGGTATCTAGGGGTC
GCGAACCGACCATAG
Protein sequenceShow/hide protein sequence
MEWDLKKEKDRSPSVKEKAWYLNQLGKGLLLKELVGTWTVVGVGDSLRVPSSRILGEEDQVGPCEQLDVQDPFNPLSEMRQKEKSMDRLHHLHPVGTTRSPQGHLWYLGV
ANRP