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Lsi01G018610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G018610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box domain-containing protein
Genome locationchr01:20370051..20371399
RNA-Seq ExpressionLsi01G018610
SyntenyLsi01G018610
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601277.1 F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia]2.7e-3468.97Show/hide
Query:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM
        MLK KRRNQRQRKKRKLKDG+G+F MDWAGLP DILVMIF++LSLVDCMS+DSVCK                         KDREMRTCAS+LDN+ WEM
Subjt:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM

Query:  ELLEAYGAYVWGSFQD
        ELLEAYGAYVWGSFQD
Subjt:  ELLEAYGAYVWGSFQD

XP_022957505.1 F-box protein At1g49360-like [Cucurbita moschata]2.7e-3468.97Show/hide
Query:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM
        MLK KRRNQRQRKKRKLKDG+G+F MDWAGLP DILVMIF++LSLVDCMS+DSVCK                         KDREMRTCAS+LDN+ WEM
Subjt:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM

Query:  ELLEAYGAYVWGSFQD
        ELLEAYGAYVWGSFQD
Subjt:  ELLEAYGAYVWGSFQD

XP_022979671.1 F-box protein At3g56470-like [Cucurbita maxima]7.7e-3468.97Show/hide
Query:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM
        MLK KRRNQRQRKKRKLKDG+GN  MDWAGLP DILVMIF++LSLVDCMS+DSVCK                         KDREMRTCAS+LDN+ WEM
Subjt:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM

Query:  ELLEAYGAYVWGSFQD
        ELLEAYGAYVWGSFQD
Subjt:  ELLEAYGAYVWGSFQD

XP_023516457.1 F-box protein At1g49360-like [Cucurbita pepo subsp. pepo]4.5e-3468.97Show/hide
Query:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM
        MLK KRRNQRQRKKRKLKDG+GN  MDWAGLP DILVMIF++LSLVDCMS+DSVCK                         KDREMRTCAS+LDN+ WEM
Subjt:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM

Query:  ELLEAYGAYVWGSFQD
        ELLEAYGAYVWGSFQD
Subjt:  ELLEAYGAYVWGSFQD

XP_038891474.1 putative F-box protein At5g55150 [Benincasa hispida]7.2e-3267.24Show/hide
Query:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM
        MLKSKRRNQRQRKKRKLKDGRG  IMDWAGLP DILV IF+QLSL DC+S+D+VCK                         KDREMRT A+ILDNR+WE+
Subjt:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM

Query:  ELLEAYGAYVWGSFQD
        ELLEAYGAYVWGSFQD
Subjt:  ELLEAYGAYVWGSFQD

TrEMBL top hitse value%identityAlignment
A0A0A0KT87 F-box domain-containing protein6.6e-3162.93Show/hide
Query:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVC-------------------------KKDREMRTCASILDNRMWEM
        M KSKRRNQRQRKKRKL++GRGN  +DWA LP D+LVMIF+QLSLVDC+S+D+VC                         KKDREMRTCASIL+NR+WE+
Subjt:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVC-------------------------KKDREMRTCASILDNRMWEM

Query:  ELLEAYGAYVWGSFQD
        EL EAYGAY+WGSFQD
Subjt:  ELLEAYGAYVWGSFQD

A0A1S4DWA3 uncharacterized protein LOC1034893026.6e-3163.79Show/hide
Query:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVC-------------------------KKDREMRTCASILDNRMWEM
        M KSKRRNQRQRKKRKL+D RGN + DWAGLP DILVMIF+QLSLVDC+S+D+VC                         KKDREMRTCASIL+NR+WE+
Subjt:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVC-------------------------KKDREMRTCASILDNRMWEM

Query:  ELLEAYGAYVWGSFQD
        EL EAYGAY+WGS QD
Subjt:  ELLEAYGAYVWGSFQD

A0A5D3CCV3 F-box protein6.6e-3163.79Show/hide
Query:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVC-------------------------KKDREMRTCASILDNRMWEM
        M KSKRRNQRQRKKRKL+D RGN + DWAGLP DILVMIF+QLSLVDC+S+D+VC                         KKDREMRTCASIL+NR+WE+
Subjt:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVC-------------------------KKDREMRTCASILDNRMWEM

Query:  ELLEAYGAYVWGSFQD
        EL EAYGAY+WGS QD
Subjt:  ELLEAYGAYVWGSFQD

A0A6J1H0R2 F-box protein At1g49360-like1.3e-3468.97Show/hide
Query:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM
        MLK KRRNQRQRKKRKLKDG+G+F MDWAGLP DILVMIF++LSLVDCMS+DSVCK                         KDREMRTCAS+LDN+ WEM
Subjt:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM

Query:  ELLEAYGAYVWGSFQD
        ELLEAYGAYVWGSFQD
Subjt:  ELLEAYGAYVWGSFQD

A0A6J1IRF4 F-box protein At3g56470-like3.7e-3468.97Show/hide
Query:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM
        MLK KRRNQRQRKKRKLKDG+GN  MDWAGLP DILVMIF++LSLVDCMS+DSVCK                         KDREMRTCAS+LDN+ WEM
Subjt:  MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCK-------------------------KDREMRTCASILDNRMWEM

Query:  ELLEAYGAYVWGSFQD
        ELLEAYGAYVWGSFQD
Subjt:  ELLEAYGAYVWGSFQD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAGAGTAAAAGGAGGAATCAAAGGCAGAGGAAAAAACGAAAGTTGAAGGATGGAAGGGGCAATTTTATTATGGATTGGGCAGGGCTCCCGCATGATATTCTTGT
CATGATCTTTAAGCAACTGTCTCTTGTGGATTGTATGTCGATTGATAGTGTTTGTAAAAAAGATAGAGAGATGAGAACTTGTGCTAGCATTCTAGACAATCGAATGTGGG
AAATGGAGCTTCTTGAGGCATATGGAGCTTATGTATGGGGATCTTTTCAGGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAGAGTAAAAGGAGGAATCAAAGGCAGAGGAAAAAACGAAAGTTGAAGGATGGAAGGGGCAATTTTATTATGGATTGGGCAGGGCTCCCGCATGATATTCTTGT
CATGATCTTTAAGCAACTGTCTCTTGTGGATTGTATGTCGATTGATAGTGTTTGTAAAAAAGATAGAGAGATGAGAACTTGTGCTAGCATTCTAGACAATCGAATGTGGG
AAATGGAGCTTCTTGAGGCATATGGAGCTTATGTATGGGGATCTTTTCAGGACTGACGAATAATAGTGAAGGATCTTGGTTGCTATTCTCTTGAAGTTAGTTTGTTGAAT
CCATTCTCTACAAGGAAGATTAACCTGCCAAGGCTTTGGAACTTCTACCAAATGGACCTTGATACTACATAGCTAACTACATTTGTATTAAGGTTGTGAGAGATTTAACC
CACTATATCCCTTTGGCCTTATTACATGCCTTCTTTGACCTTTTAATCTATAATAGTCATGTTAAGGGAGAAGAAGAAGTATCAGGAATAAAACGTCACAAGAGACGAGA
TCTAAAATAGGATATAGTTCAGGGAGAAGAAGAAGTATCGAGACTAAAACGTTAGGAGAGCCAAGATCTAAAATAGGATATAGTTCAAGAAGAAGAAGTATAAGGACTAA
AACATTACGAGAGCCAAGATCTAAAATAGGATATAATTCAGGGAGAAGAAGAAACATAGGGACTTAAATGTCACGAAAGCCGAGATCTAAAATAGGATATAGTTTACGAA
GAAGAAGAAGTATAGGGACTAAAACGTTACGAAAGTCGGATCTAAAATAGGATATAGTTTAGGGAGAAGAAGAAGTAGATGTAGATATAGATAATCTTTAACTGCTCCCT
TTGAAAATCATGTGCAAATTGACGGTAGAATTACACATACTTTGCTGTAAGTTTTAAGGAAAAAAAAGTCATAGAAAAAAGTTCTAAAAATCATTAAAATAATTATATTG
GTAAAATCACAGTGGAATATATGTTTTTTCCACCATTACTGGAACCTGCTGAGAATATAAACAAGAAACAATCAAAACAACCTTTACTTAAGAGATGAAGAAGAGAGGAT
AGTTTAGTGGACGTTTTGAAATTCTTTATATATGTGTGTGTTTATTTCTTTTTCTTTTTCTTTTCTTTTAGGGATTGTTCCAACTGTTATTTTTATATATTATATTTGAT
GAGATTGTAAAACAATATCCCTGGATTTGTACCTTTTTCTTTCATAACATGAAAAGTTTGCTGC
Protein sequenceShow/hide protein sequence
MLKSKRRNQRQRKKRKLKDGRGNFIMDWAGLPHDILVMIFKQLSLVDCMSIDSVCKKDREMRTCASILDNRMWEMELLEAYGAYVWGSFQD