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Lsi01G018980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G018980
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:22304049..22304578
RNA-Seq ExpressionLsi01G018980
SyntenyLsi01G018980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649705.1 hypothetical protein Csa_011947, partial [Cucumis sativus]5.6e-0659.68Show/hide
Query:  VNSLELGGREI--DDLGTSTIDSLEVGMV-ASKVVGACIESRRVLEVAMSVDGEDMIRRKKN
        +NS E+GGREI  DD GTS IDSL++ MV +S+VVG C +S   L VAM ++GEDM  RKKN
Subjt:  VNSLELGGREI--DDLGTSTIDSLEVGMV-ASKVVGACIESRRVLEVAMSVDGEDMIRRKKN

KAE8649712.1 hypothetical protein Csa_012861, partial [Cucumis sativus]4.7e-2157.76Show/hide
Query:  LLCIGFGADHLTGPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREIDVNSLELGGREIDDLGTSTIDSLEVGMV-ASKVVGACIESRRVLEVAMSVD
        +LC+G GADH  GPLG+Q   D AG GALAPIPL S ++NS E+GGREID           DD GTS IDSL++ MV +S+VVG C +S   L VAM +D
Subjt:  LLCIGFGADHLTGPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREIDVNSLELGGREIDDLGTSTIDSLEVGMV-ASKVVGACIESRRVLEVAMSVD

Query:  GEDMIRRKKNVKKNVS
        GEDM  RKKNVKK  S
Subjt:  GEDMIRRKKNVKKNVS

KAG6581979.1 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia]3.9e-0739.67Show/hide
Query:  TGPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREID-------------VNSLELGGREIDDLG-----TSTIDSLEVGMVASKVVGACIESRRVLE
        T P G    ++E G+GALAP  L S V    E+GG +ID             V +  L G ++D        +S +D+LEVG+VAS VV AC ES   LE
Subjt:  TGPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREID-------------VNSLELGGREIDDLG-----TSTIDSLEVGMVASKVVGACIESRRVLE

Query:  VAMSVDGEDMIRRKKNVKKNV
        VA S + ED ++RKK  ++N+
Subjt:  VAMSVDGEDMIRRKKNVKKNV

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACAATTTGCGCATATAGTTGAGTCTAATATACTGTTGTGTATTGGATTTGGAGCAGACCATCTGACTGGTCCTTTGGGCATGCAAGTTAGGATGGATGAGGCAGG
GGTTGGTGCGCTTGCACCCATTCCACTAAGATCAACAGTGGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGGGAAATTG
ATGATTTAGGTACTTCAACAATAGATTCTTTAGAAGTAGGAATGGTCGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAAGGGTTCTAGAAGTTGCCATGAGTGTG
GATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATACAATTTGCGCATATAGTTGAGTCTAATATACTGTTGTGTATTGGATTTGGAGCAGACCATCTGACTGGTCCTTTGGGCATGCAAGTTAGGATGGATGAGGCAGG
GGTTGGTGCGCTTGCACCCATTCCACTAAGATCAACAGTGGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGGGAAATTG
ATGATTTAGGTACTTCAACAATAGATTCTTTAGAAGTAGGAATGGTCGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAAGGGTTCTAGAAGTTGCCATGAGTGTG
GATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA
Protein sequenceShow/hide protein sequence
MIQFAHIVESNILLCIGFGADHLTGPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREIDVNSLELGGREIDDLGTSTIDSLEVGMVASKVVGACIESRRVLEVAMSV
DGEDMIRRKKNVKKNVSY