; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G018990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G018990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:22312132..22360812
RNA-Seq ExpressionLsi01G018990
SyntenyLsi01G018990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649705.1 hypothetical protein Csa_011947, partial [Cucumis sativus]3.8e-0547.56Show/hide
Query:  LAPIPLRSTVVNSLELGGREIDVNSLELGRREIDDLGTSTIDSLEVGIV-ASKVVGACIESRKVLEVAMSVDGEDMIRRKKN
        L P      ++NS E+GGREID           DD GTS IDSL++ +V +S+VVG C +S   L VAM ++GEDM  RKKN
Subjt:  LAPIPLRSTVVNSLELGGREIDVNSLELGRREIDDLGTSTIDSLEVGIV-ASKVVGACIESRKVLEVAMSVDGEDMIRRKKN

KAE8649712.1 hypothetical protein Csa_012861, partial [Cucumis sativus]9.3e-2056.03Show/hide
Query:  LLCIGFGADHLTDPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREIDVNSLELGRREIDDLGTSTIDSLEVGIV-ASKVVGACIESRKVLEVAMSVD
        +LC+G GADH   PLG+Q   D AG GALAPIPL S ++NS E+GGREID           DD GTS IDSL++ +V +S+VVG C +S   L VAM +D
Subjt:  LLCIGFGADHLTDPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREIDVNSLELGRREIDDLGTSTIDSLEVGIV-ASKVVGACIESRKVLEVAMSVD

Query:  GEDMIRRKKNVKKNVS
        GEDM  RKKNVKK  S
Subjt:  GEDMIRRKKNVKKNVS

KAG6581979.1 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-0638.28Show/hide
Query:  TDPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREID-------------VNSLELGRREIDDLG-----TSTIDSLEVGIVASKVVGACIESRKVLE
        T P G    ++E G+GALAP  L S V    E+GG +ID             V +  L   ++D        +S +D+LEVGIVAS VV AC ES   LE
Subjt:  TDPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREID-------------VNSLELGRREIDDLG-----TSTIDSLEVGIVASKVVGACIESRKVLE

Query:  VAMSVDGEDMIRRKKNVKKNVSYRKAIE
        VA S + ED ++RKK  ++N+     +E
Subjt:  VAMSVDGEDMIRRKKNVKKNVSYRKAIE

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAAGTTTGCGCATATAGTTGAGTCTAATATGCTGTTGTGTATTGGATTTGGAGCAGACCATCTGACCGATCCTTTGGGCATGCAAGTTAGGATGGATGAGGCAGG
GGTTGGTGCGCTTGCACCCATTCCACTAAGATCAACAGTGGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGTAAACTCGTTAGAGCTTGGAAGAAGGGAAATTG
ATGATTTAGGTACTTCAACAATAGATTCTTTAGAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAAAGGTTCTAGAAGTTGCCATGAGTGTG
GATGGAGAAGATATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATCGAAAAGCCATTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAAGTTTGCGCATATAGTTGAGTCTAATATGCTGTTGTGTATTGGATTTGGAGCAGACCATCTGACCGATCCTTTGGGCATGCAAGTTAGGATGGATGAGGCAGG
GGTTGGTGCGCTTGCACCCATTCCACTAAGATCAACAGTGGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGTAAACTCGTTAGAGCTTGGAAGAAGGGAAATTG
ATGATTTAGGTACTTCAACAATAGATTCTTTAGAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAAAGGTTCTAGAAGTTGCCATGAGTGTG
GATGGAGAAGATATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATCGAAAAGCCATTGAATAA
Protein sequenceShow/hide protein sequence
MQKFAHIVESNMLLCIGFGADHLTDPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREIDVNSLELGRREIDDLGTSTIDSLEVGIVASKVVGACIESRKVLEVAMSV
DGEDMIRRKKNVKKNVSYRKAIE