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Lsi01G019310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G019310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
Genome locationchr01:24367847..24383001
RNA-Seq ExpressionLsi01G019310
SyntenyLsi01G019310
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573930.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.3e-1474.55Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF MPL+KKD  E AKSQFS++HSDHL IIRAY G KE E+NFGGYD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

KAG7012994.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1474.55Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF MPL+KKD  E AKSQFS++HSDHL IIRAY G KE E+NFGGYD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

XP_022944845.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like [Cucurbita moschata]1.3e-1474.55Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF MPL+KKD  E AKSQFS++HSDHL IIRAY G KE E+NFGGYD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

XP_023541029.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like [Cucurbita pepo subsp. pepo]1.3e-1474.55Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF MPL+KKD  E AKSQFS++HSDHL IIRAY G KE E+NFGGYD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

XP_038892223.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Benincasa hispida]2.6e-1576.36Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF  PL+KKDV E AKSQFS++HSDHL IIRAYGG KE E+NFGGYD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

TrEMBL top hitse value%identityAlignment
A0A1S3BF36 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X18.3e-1572.73Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF  PL+KKD  E AKSQFS++HSDHL IIRAYGG KE E+N+GGYD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

A0A1S3BFL6 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X28.3e-1572.73Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF  PL+KKD  E AKSQFS++HSDHL IIRAYGG KE E+N+GGYD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

A0A5A7SZF7 DExH-box ATP-dependent RNA helicase DExH58.3e-1572.73Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF  PL+KKD  E AKSQFS++HSDHL IIRAYGG KE E+N+GGYD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

A0A5D3CFK3 DExH-box ATP-dependent RNA helicase DExH58.3e-1572.73Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF  PL+KKD  E AKSQFS++HSDHL IIRAYGG KE E+N+GGYD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

A0A6J1FZ75 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like6.3e-1574.55Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF MPL+KKD  E AKSQFS++HSDHL IIRAY G KE E+NFGGYD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

SwissProt top hitse value%identityAlignment
F4HYJ7 DExH-box ATP-dependent RNA helicase DExH32.2e-1257.89Show/hide
Query:  PFSMPLKKKDVVETAKSQFS-RNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLSA
        PF MP  KKD+ ETA+S+FS R++SDHL ++RAY G K+ E+   GYD  WKNFLS+
Subjt:  PFSMPLKKKDVVETAKSQFS-RNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLSA

F4ILR7 DExH-box ATP-dependent RNA helicase DExH15.7e-0535.59Show/hide
Query:  YQRPFSMPLKKKDVVETAKSQFSRNH-SDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        Y+ PF +PL +K+  + AK  F+ +  SDH+ +++AY G ++ ++     D  W+NFLS
Subjt:  YQRPFSMPLKKKDVVETAKSQFSRNH-SDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

F4IM84 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial4.8e-1260Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF  P  KKD+ E AKSQFSR+HSDHL ++RAY G K+ E+    YD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

Arabidopsis top hitse value%identityAlignment
AT1G48650.1 DEA(D/H)-box RNA helicase family protein1.5e-1357.89Show/hide
Query:  PFSMPLKKKDVVETAKSQFS-RNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLSA
        PF MP  KKD+ ETA+S+FS R++SDHL ++RAY G K+ E+   GYD  WKNFLS+
Subjt:  PFSMPLKKKDVVETAKSQFS-RNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLSA

AT1G48650.2 DEA(D/H)-box RNA helicase family protein1.5e-1357.89Show/hide
Query:  PFSMPLKKKDVVETAKSQFS-RNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLSA
        PF MP  KKD+ ETA+S+FS R++SDHL ++RAY G K+ E+   GYD  WKNFLS+
Subjt:  PFSMPLKKKDVVETAKSQFS-RNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLSA

AT2G01130.1 DEA(D/H)-box RNA helicase family protein3.4e-1360Show/hide
Query:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        PF  P  KKD+ E AKSQFSR+HSDHL ++RAY G K+ E+    YD  WKNFLS
Subjt:  PFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

AT2G35920.1 RNA helicase family protein4.1e-0635.59Show/hide
Query:  YQRPFSMPLKKKDVVETAKSQFSRNH-SDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS
        Y+ PF +PL +K+  + AK  F+ +  SDH+ +++AY G ++ ++     D  W+NFLS
Subjt:  YQRPFSMPLKKKDVVETAKSQFSRNH-SDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLS

AT5G04895.1 DEA(D/H)-box RNA helicase family protein1.1e-0843.86Show/hide
Query:  PFSMPLKKKDVVETAKSQFS-RNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLSA
        PF +P  KKD+  +AK +FS +++SDH+ ++RA+ G K+ E+    Y+  W+NFLSA
Subjt:  PFSMPLKKKDVVETAKSQFS-RNHSDHLVIIRAYGGRKEVEKNFGGYDIYWKNFLSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGGAAGCGGTAGAGGCGAACGGCGGACGGCGGCAATGGGCGGCCGGCGAAGCAGACAAGGTCGGCCGACCAGGACAGACAATTCCGGCGAGCAGTCGATGAAGGT
CATACAACGTGCGGTCGAGTTGTTAGTTGACTATGCTCCCAATGGAACCAATTTTGACCGTTGTTGCCCGTCACAATATCAGAGACCCTTTTCTATGCCACTTAAGAAGA
AGGATGTTGTAGAGACTGCAAAATCCCAATTTTCACGAAATCATAGTGATCACCTTGTTATTATCCGGGCCTATGGGGGACGGAAAGAAGTTGAGAAGAACTTTGGTGGA
TATGACATCTATTGGAAGAACTTTCTTTCTGCTGGTGGTCGTGACAATTTTGGACGTAACGACGACACGAAGGTTGAGGATGAAAGAAGAGATGCCGGAAGCAGAGGGAG
GACGGGAGCAGGAGAACAGCTAGGCACCTCAAGCTTAAACCTGACTAAGGTATCAACGACAATGAATAGCAACAAAGAAAGACTGGCGGCAAATGGACGCAGCACCAATG
ACAGAAGCAGCGGTAACAACAACAAAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACGGAAGCGGTAGAGGCGAACGGCGGACGGCGGCAATGGGCGGCCGGCGAAGCAGACAAGGTCGGCCGACCAGGACAGACAATTCCGGCGAGCAGTCGATGAAGGT
CATACAACGTGCGGTCGAGTTGTTAGTTGACTATGCTCCCAATGGAACCAATTTTGACCGTTGTTGCCCGTCACAATATCAGAGACCCTTTTCTATGCCACTTAAGAAGA
AGGATGTTGTAGAGACTGCAAAATCCCAATTTTCACGAAATCATAGTGATCACCTTGTTATTATCCGGGCCTATGGGGGACGGAAAGAAGTTGAGAAGAACTTTGGTGGA
TATGACATCTATTGGAAGAACTTTCTTTCTGCTGGTGGTCGTGACAATTTTGGACGTAACGACGACACGAAGGTTGAGGATGAAAGAAGAGATGCCGGAAGCAGAGGGAG
GACGGGAGCAGGAGAACAGCTAGGCACCTCAAGCTTAAACCTGACTAAGGTATCAACGACAATGAATAGCAACAAAGAAAGACTGGCGGCAAATGGACGCAGCACCAATG
ACAGAAGCAGCGGTAACAACAACAAAAGTTGA
Protein sequenceShow/hide protein sequence
MNGSGRGERRTAAMGGRRSRQGRPTRTDNSGEQSMKVIQRAVELLVDYAPNGTNFDRCCPSQYQRPFSMPLKKKDVVETAKSQFSRNHSDHLVIIRAYGGRKEVEKNFGG
YDIYWKNFLSAGGRDNFGRNDDTKVEDERRDAGSRGRTGAGEQLGTSSLNLTKVSTTMNSNKERLAANGRSTNDRSSGNNNKS