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Lsi01G019380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G019380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationchr01:24857853..24860366
RNA-Seq ExpressionLsi01G019380
SyntenyLsi01G019380
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022928730.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata]3.5e-2994.44Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSK  LG SGK+GVYSTNGVQELLECPVCTNLMYPPIYQ
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

XP_022928735.1 E3 ubiquitin-protein ligase SINAT2-like isoform X2 [Cucurbita moschata]3.5e-2994.44Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSK  LG SGK+GVYSTNGVQELLECPVCTNLMYPPIYQ
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

XP_022967856.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita maxima]3.5e-2994.44Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSK  LG SGK+GVYSTNGVQELLECPVCTNLMYPPIYQ
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

XP_022967857.1 E3 ubiquitin-protein ligase SINAT2-like isoform X2 [Cucurbita maxima]3.5e-2994.44Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSK  LG SGK+GVYSTNGVQELLECPVCTNLMYPPIYQ
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

XP_038881778.1 E3 ubiquitin-protein ligase SINAT2-like [Benincasa hispida]2.4e-3095.83Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPGSSTCKEVVDSHPSVSGHDIAMSK+ENNSTSSK+ LGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

TrEMBL top hitse value%identityAlignment
A0A6J1EBG4 RING-type E3 ubiquitin transferase1.8e-2686.11Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPGSSTCK+ VDSHPS+SGHDIA+SKSENN T+SK+ LGL GK+GVYSTNGVQELLECPVCTNLMYPPIYQ
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

A0A6J1ESE8 RING-type E3 ubiquitin transferase1.7e-2994.44Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSK  LG SGK+GVYSTNGVQELLECPVCTNLMYPPIYQ
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

A0A6J1ESF1 RING-type E3 ubiquitin transferase1.7e-2994.44Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSK  LG SGK+GVYSTNGVQELLECPVCTNLMYPPIYQ
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

A0A6J1HRY9 RING-type E3 ubiquitin transferase1.7e-2994.44Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSK  LG SGK+GVYSTNGVQELLECPVCTNLMYPPIYQ
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

A0A6J1HT85 RING-type E3 ubiquitin transferase1.7e-2994.44Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSK  LG SGK+GVYSTNGVQELLECPVCTNLMYPPIYQ
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

SwissProt top hitse value%identityAlignment
P93748 Putative E3 ubiquitin-protein ligase SINAT16.2e-1354.17Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPG S  KE ++S+ +   +++ M+K E NS  +KS  G  GK   +S+NGV ELLECPVCTNLMYPPI+Q
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

Q9M2P4 E3 ubiquitin-protein ligase SINAT28.2e-1352.05Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSE-NNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPG S  KEV++S+ +   +++  +K E NN+  +K      GK G++S NGV ELLECPVCTNLMYPPI+Q
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSE-NNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

Arabidopsis top hitse value%identityAlignment
AT2G41980.1 Protein with RING/U-box and TRAF-like domains4.4e-1454.17Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPG S  KE ++S+ +   +++ M+K E NS  +KS  G  GK   +S+NGV ELLECPVCTNLMYPPI+Q
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

AT3G58040.1 seven in absentia of Arabidopsis 25.8e-1452.05Show/hide
Query:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSE-NNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        MAPG S  KEV++S+ +   +++  +K E NN+  +K      GK G++S NGV ELLECPVCTNLMYPPI+Q
Subjt:  MAPGSSTCKEVVDSHPSVSGHDIAMSKSE-NNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

AT3G61790.1 Protein with RING/U-box and TRAF-like domains1.4e-0447.46Show/hide
Query:  SHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        S+ SVS H      + NN+T+  +    SG +   +T  V ELLECPVCTN MYPPI+Q
Subjt:  SHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ

AT4G27880.1 Protein with RING/U-box and TRAF-like domains4.2e-0432.35Show/hide
Query:  SSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ
        SST  E+  +      +  + +K+   + ++     + G         V ELLECPVCT  MYPPI+Q
Subjt:  SSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAAG
CCCTCTTGGTTTGAGTGGGAAAATCGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGAATT
TTATAGAATGTTTCCATAGGAACATGAGGTCCATGCATACTGGAATTGGTGTTTTCACCTTCCTTTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAAAAAGTAAAAAGCCAAAGAGAAATTAAATAGAGAGAGAGAAACCATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATT
CATCGATAAACAATCATTGATGTACAACTTTTTGTTCGAGTTCCAAATCCGAGGAGCTATAGGCTTAGCCCAGTTCCGGTCCTTGTGGGATTGAGGAGCTAGTCACCACA
TATTGGTTAGGAAAGAATCTAGCAAATGGTCAGCAAGCTTTATGAGATAGAGTTGGACTTCAGGTTATGATTGAACTCATGGATGAGTGATGCTTAGCATTTGGTGAAGA
GTTTCCATTAATACCTTAAAGAAATATATTAAAATTTAATTAAGCCATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATG
ACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAAGCCCTCTTGGTTTGAGTGGGAAAATCGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAG
TGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGAATTTTATAGAATGTTTCCATAGGAACATGAGGTCCATGCATACTGGAATTGGTGTTTTCACCTTCCT
TTGA
Protein sequenceShow/hide protein sequence
MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQNFIECFHRNMRSMHTGIGVFTFL